View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_10 (Length: 577)
Name: NF16077_high_10
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 42703399 - 42703942
Alignment:
| Q |
19 |
attatgctattaagattacctgtaagggagagatatgagagttaaagaattgatcagcagtgatataattctgggtgagtttaatacaaacatcagaagc |
118 |
Q |
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| T |
42703399 |
attatgctattaagattacctgtaagggagagatatgagagttaaagaattgatcagcagtgatataattctgggtgagtttaatacaaacatcagaagc |
42703498 |
T |
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| Q |
119 |
agccaaacacggcataatcttccgccaactcccagaaccagtaacacggtgcctcaaccaagaagaaaacccatctaacctaaactctttgtaccctcta |
218 |
Q |
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| T |
42703499 |
agccaaacacggcataatcttccgccaactcccagaaccagtaacacggtgcctcaaccaagaagaaaacccatctaacctaaactctttgtaccctcta |
42703598 |
T |
|
| Q |
219 |
tcaggaacaacatagcttccatcaggtctagtaacaacgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42703599 |
tcaggaacaacatagcttccatcaggtctagtaacaacgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaa |
42703698 |
T |
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| Q |
319 |
gtgctaagagaccttctttgttataataagcacctacaaaaccagttaaagcaacgaggaagacaaggatgccgactatgacaatgggccatcggaaatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42703699 |
gtgctaagagaccttctttgttataataagcacctataaaaccagttaaagcaacgaggaagacaaggatgccgattatgacaatgggccatcggaaatt |
42703798 |
T |
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| Q |
419 |
ggctatgcattcgttgtctggttttgaagctagccaaattcctgaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttatg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42703799 |
ggctatgcattcgttgtctggttttgaagctagccaaattccggaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttata |
42703898 |
T |
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| Q |
519 |
ttgttgcttacacccatcacaggtatcagttaccactgcctttg |
562 |
Q |
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| T |
42703899 |
ttgttgcttacacccatcacaggtatcagttaccactgcctttg |
42703942 |
T |
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