View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_103 (Length: 238)
Name: NF16077_high_103
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 55654721 - 55654932
Alignment:
| Q |
16 |
aatattagttgttgcttactctttcatcgttaaactgcaatattttaagnnnnnnnccctcaaaacttttattgaactacatttatatacatttttattg |
115 |
Q |
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| T |
55654721 |
aatattagttgttgcttactctttcatcgttaaactgcaatattttaagtttttttccctcaaaacttttattgaactacatttatatacatttttattg |
55654820 |
T |
|
| Q |
116 |
gtgacgtgatctacatttatatacatttatatacatctttaatatggtgacgtacctgatctacatttatgtacatttttattggttttcaatgtgtgct |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55654821 |
gtgacgtgatctgcatttatatacatttatatacatctttaatatggtgacgtacctgatctacatttatgtacatttttattggttttcaatgtgtact |
55654920 |
T |
|
| Q |
216 |
ttaaagaatatt |
227 |
Q |
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|||||||||||| |
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| T |
55654921 |
ttaaagaatatt |
55654932 |
T |
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