View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_110 (Length: 226)
Name: NF16077_high_110
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_110 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 28372791 - 28373006
Alignment:
| Q |
1 |
aatacatgtttcttttgcttacatcttgttcgactttctattatccgacatcatgattcattggcatgtccatctttttgggttttattattactagccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372791 |
aatacatgtttcttttgcttacatcttgttcgactttctattatccgacatcatgattcattggcatgtccatctttttgggttttattattactagccg |
28372890 |
T |
|
| Q |
101 |
tttttgtattatgatgtctaaaaaatgcatagagtgaattagtgtatcctttaggcttctatgcttctatcgatgctttaaaacttcgacttcaacttcc |
200 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28372891 |
tttttgtcgtatgatgtctaaaaaatgcatagagtgaattagtgtatcctttaggcttctatgcttctatcgatgctttaaaacttcgacctcaacttcc |
28372990 |
T |
|
| Q |
201 |
tttttccttgattcat |
216 |
Q |
| |
|
|||||||||||||||| |
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| T |
28372991 |
tttttccttgattcat |
28373006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 44768688 - 44768473
Alignment:
| Q |
1 |
aatacatgtttcttttgcttacatcttgttcgactttctattatccgacatcatgattcattggcatgtccatctttttgggttttattattactagccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44768688 |
aatacatgtttcttttgcttacatcttgttcgactttctattatctgacatcatgattcattggcatgtccatcttttcgggttttattattactagccg |
44768589 |
T |
|
| Q |
101 |
tttttgtattatgatgtctaaaaaatgcatagagtgaattagtgtatcctttaggcttctatgcttctatcgatgctttaaaacttcgacttcaacttcc |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
44768588 |
tttttgtggtatgatgtctaaaaaatgcatagagtgaattagtgtatcctttaggcttctatgcttctatcgatgctttaaaactttgacctcaacttcc |
44768489 |
T |
|
| Q |
201 |
tttttccttgattcat |
216 |
Q |
| |
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|||||||||||||||| |
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|
| T |
44768488 |
tttttccttgattcat |
44768473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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