View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_112 (Length: 220)
Name: NF16077_high_112
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_112 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 13581859 - 13582050
Alignment:
| Q |
13 |
gcaaaggtattccaaactatcagtatgtttttgatattccctttaatgcttacattcatcgataccaactttgaaagaggtttgaggacttgaatagtct |
112 |
Q |
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| T |
13581859 |
gcaaaggtattccaaactatcagtatgtttttgatattccctttaatgcttatattcatcgataccaactttgaaagaggtttgaggacttgaatagtct |
13581958 |
T |
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| Q |
113 |
cctttgagctcaatctccattgcattgaaaccaaatttgcacattgaaaacaaattcacttgttccacaatttcctcatttatcaaacattg |
204 |
Q |
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| T |
13581959 |
cctttgagctcaatctccattgcattgaaaccaaatttgctcattgaaaacaaattcacttgttccacaatttcttcatttatcaaacattg |
13582050 |
T |
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Target: scaffold0027 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 62812 - 62742
Alignment:
| Q |
79 |
aactttgaaagaggtttgaggacttgaatagtctcctttgagctcaatctccattgcattgaaaccaaatt |
149 |
Q |
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| T |
62812 |
aactttggaatagtttcgaggacttgaatagtttccttcaagctcaatgtccgttgcattgaaaccaaatt |
62742 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 21320987 - 21321057
Alignment:
| Q |
79 |
aactttgaaagaggtttgaggacttgaatagtctcctttgagctcaatctccattgcattgaaaccaaatt |
149 |
Q |
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| T |
21320987 |
aactttggaatagtttcgaggacttgaatagtttccttcaagctcaatgtccgttgcattgaaaccaaatt |
21321057 |
T |
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