View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_high_22 (Length: 488)
Name: NF16077_high_22
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 207 - 410
Target Start/End: Complemental strand, 5922116 - 5921913
Alignment:
| Q |
207 |
tctctcttaatatggtatcagtttcttctcctccaatgggggagtttgttacgatccataaccattttttctaacaacttccgctgcaattttccctctc |
306 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5922116 |
tctctcttgatatggtatcagtttcttctccttcaatgagggagtttgttacgatccataaccgttttttctaacaacttccgctgcaattttccctctc |
5922017 |
T |
|
| Q |
307 |
tccttcatcttcttcactgaatcttcatgattctgtgcttgattcttcatttttgtgcttgattgcttcgtcttcaagcttcgttctctgtgtatttgtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5922016 |
tccttcatcttcttcactgaatcttcatgattatgtgcttgattcttcatttttgtgcctgattgcttcgtcttcaagcttcgttctctatgtatttgtt |
5921917 |
T |
|
| Q |
407 |
gctt |
410 |
Q |
| |
|
|||| |
|
|
| T |
5921916 |
gctt |
5921913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 5922477 - 5922332
Alignment:
| Q |
18 |
gatctcttgctaatcatggaatgggttgctatgatcttccacctgaatcttttcagagtttgataggcttggttgtagcacaaacttcttttgttgatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5922477 |
gatctcttgctaatcatggaatgggttgctatgatcttccacctgaatcttttcagagtttgatagccttggttgtagcacaaacttcttttgttgatat |
5922378 |
T |
|
| Q |
118 |
ttgatgaaagtattaccttataattatattcaaatttcaaataaac |
163 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5922377 |
ttgatgaaagtattaccttgtaattatattcaaatttcaaataaac |
5922332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 191 - 411
Target Start/End: Complemental strand, 20326387 - 20326168
Alignment:
| Q |
191 |
tttcattcatattctttctctcttaatatggtatcagtttcttctcctccaatgggggagtttgttacgatccataaccattttttctaacaacttccgc |
290 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||| |||||||||| | ||||||||| |||||||| |
|
|
| T |
20326387 |
tttcattcatattctttctct--taatatggtatcagtttcttctccttcaattggagagtttgttaagatccataacaaccttttctaactacttccgc |
20326290 |
T |
|
| Q |
291 |
tgcaattttccctctctccttcatcttcttcactgaatcttcatgattctgtgcttgattct-tcatttttgtgcttgattgcttcgtcttcaagcttcg |
389 |
Q |
| |
|
||||||||| ||| | ||| |||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| | |
|
|
| T |
20326289 |
tgcaatttttcctttttccatcatcttcttcattgaatcttcatgattctgtgattgattctcttttttttgtgcttgattgcttcgtcttcaagctttg |
20326190 |
T |
|
| Q |
390 |
ttctctgtgtatttgttgcttc |
411 |
Q |
| |
|
|| |||| | |||||||||||| |
|
|
| T |
20326189 |
ttttctgagaatttgttgcttc |
20326168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 36164964 - 36164903
Alignment:
| Q |
186 |
acacttttcattcatattctttctctcttaatatggtatcagtttcttctcctccaatgggg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
36164964 |
acacttttcattcatattctttctctcttaatatggtatcagtttcttctccttcaaggggg |
36164903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University