View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_25 (Length: 460)
Name: NF16077_high_25
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 20688347 - 20687911
Alignment:
| Q |
14 |
ctttttgcatgaatgctttcaaactattgtggtctttatactttacttttgtgcttgtggagcgtatggtcctcttgaattttattttactcgtgtgttc |
113 |
Q |
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| T |
20688347 |
ctttttgcatggatgctttcaaactattgtggtctttatactttacttttgtgcttgtggagcgtatggtcctcttgaattttattttactcgtgtgttc |
20688248 |
T |
|
| Q |
114 |
gatcttatgtaaacatgtgacactctaaatttgattttaatattagatattagattctttcctatggcaatggttaaattgttgatcaatgttgaccttt |
213 |
Q |
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| T |
20688247 |
gatcttatgtaaacatgtgacactctaaatttgattttaatattagatattagattatttcctatggcaatggttaaattgttgatcaatgttgaccttt |
20688148 |
T |
|
| Q |
214 |
ttattttgtagaaagtggttaatggtggcaaggtggaattttggagttgccttagcttttctagattgaacccaactcaattttgttcggagttggctat |
313 |
Q |
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| T |
20688147 |
ttattttgtagaaagtggttaatggtggcaaggtggaattttggagttgccttagcttttctagattgaacccaactcaattttgtgcggagttggctat |
20688048 |
T |
|
| Q |
314 |
tatctgtcaagccaagggaatagtatgttgtttgtttgtactatttcatttaataattattatatgcttccccataattttgacaacctcttttacctgt |
413 |
Q |
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| T |
20688047 |
tatctgtcaagccaagggaatagtatgttgtttgtttgtactatttcatttaataattattatatgcttccccataattttgacaacctcttttacctgt |
20687948 |
T |
|
| Q |
414 |
ttggatcttgtaccagcttttcaaccgagatcctttg |
450 |
Q |
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| T |
20687947 |
ttggatcttgtaccagcttttcaaccgagatcctttg |
20687911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 20664074 - 20663634
Alignment:
| Q |
14 |
ctttttgcatgaatgctttcaaactattgtggtctttatactttacttttgtgcttgtggagcgtatggtcctcttgaattttattttactcgtgtgttc |
113 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||| |
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| T |
20664074 |
ctttttgtatgaatgctttcaaattattgtggtctttatactttacttttgtgcttgtgaagcgtatggtcctcttgaattttatttaacttgcgtgttt |
20663975 |
T |
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| Q |
114 |
gatcttatgtaaacatgtgacactctaaatt----tgattttaatattagatattagattctttcctatggcaatggttaaattgttgatcaatgttgac |
209 |
Q |
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| T |
20663974 |
gatcttatgtaaacatgtgacaatctaaattaatatgattttaatattagatattagattctttcctatgacaatggttaaattgttgatcaatgttgac |
20663875 |
T |
|
| Q |
210 |
ctttttattttgtagaaagtggttaatggtggcaaggtggaattttggagttgccttagcttttctagattgaacccaactcaattttgttcggagttgg |
309 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20663874 |
ctttttattttgtagaaagtggttaatggtggcacggtgcaattttggagttgccttagcttttctagattgaacccaactcaattttgtgcggagttgg |
20663775 |
T |
|
| Q |
310 |
ctattatctgtcaagccaagggaatagtatgttgtttgtttgtactatttcatttaataattattatatgcttccccataattttgacaacctcttttac |
409 |
Q |
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|| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20663774 |
ttaatatgtgtcaagccaagggaatagtatgttgtctgtttgtactatttcatttaataattattatatgcttccccataattttgacaacctcttttac |
20663675 |
T |
|
| Q |
410 |
ctgtttggatcttgtaccagcttttcaaccgagatcctttg |
450 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||| |
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| T |
20663674 |
ctgtttggatcttgtaccagattttcaacagagatcctttg |
20663634 |
T |
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