View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_27 (Length: 445)
Name: NF16077_high_27
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 24 - 439
Target Start/End: Complemental strand, 45595691 - 45595276
Alignment:
| Q |
24 |
ggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagat |
123 |
Q |
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| T |
45595691 |
ggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagat |
45595592 |
T |
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| Q |
124 |
tgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatca |
223 |
Q |
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| T |
45595591 |
tgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatca |
45595492 |
T |
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| Q |
224 |
tgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccat |
323 |
Q |
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| T |
45595491 |
tgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccat |
45595392 |
T |
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| Q |
324 |
cgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaat |
423 |
Q |
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| T |
45595391 |
cgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaat |
45595292 |
T |
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| Q |
424 |
gtttgcctttgcttct |
439 |
Q |
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| T |
45595291 |
gtttgcctttgcttct |
45595276 |
T |
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Back To:
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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 337
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
171 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
270 |
Q |
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|||| |||||||| ||||||||| ||||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||| | || |||| |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
271 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
337 |
Q |
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|||||||| ||| ||||| |||| |||||||| | || |||||||| ||||| ||||||||||| |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
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