View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_29 (Length: 437)
Name: NF16077_high_29
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 54786591 - 54787007
Alignment:
| Q |
1 |
aacctgtgttgcacagggttggaggtggaaggtatacttgggatccaaaaattaacttcacaaattgggcaagtaatgagcacttttatcagggtgattg |
100 |
Q |
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| T |
54786591 |
aacctgtgttgcacagggttggaggtggaaggtatacttgggatccaaaaattaacttcacaaattgggcaagtaatgagcacttttaccagggtgattg |
54786690 |
T |
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| Q |
101 |
gctatgtaagttcgttccttcctgacacatgttgattaatatcattgcaaataatttatttattattaactgaagtgaattctcttttttgtaaatagat |
200 |
Q |
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| T |
54786691 |
gctatgtaagttcgttccttcctgacacatgttgattaatatcattgcaaata-tttatttattattaactgaagtgaattctcttttttgtaaatagat |
54786789 |
T |
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| Q |
201 |
tttggttttgataagcacatctataatgttcttgaggtgaacaaaacaaattatgagaaatgtgttgataagggcttcataagcaacatcacgagaggag |
300 |
Q |
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| T |
54786790 |
tttggttttgataagcacatctataatgttcttgaggtgaacaaaacaaattatgagaaatgtgttgataagggcttcataagcaacatcacgagaggag |
54786889 |
T |
|
| Q |
301 |
gaagagatgttttccaactattagaggcaaagacatattactttctatgtggtagaggcttttgcttccatggaatgaaggttgatattaacgttgaacc |
400 |
Q |
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| T |
54786890 |
gaagagatgttttccaactcttagaggcaaagacatattactttctatgtggtagaggcttttgcttccatggaatgaaggttgatattaacgttgaacc |
54786989 |
T |
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| Q |
401 |
actcccacctgacaatgc |
418 |
Q |
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| T |
54786990 |
actcccacctgacaatgc |
54787007 |
T |
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