View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_high_39 (Length: 392)
Name: NF16077_high_39
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 39561848 - 39562213
Alignment:
| Q |
10 |
attattctacaattggatcagagtgtaacacttcacttgattattttcaagacaagtaagacattttaaacccttgagtttattccttattttcctcttg |
109 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39561848 |
attattcaactattggatcagagtgtaacacttcacttgattattttcaagataagtaagacattttaaacccttgagtttattccttattttcctcttg |
39561947 |
T |
|
| Q |
110 |
gggagttataattactgacattactaaaattaccattgaagaaatttagcagactttggatgggatgcaagggtagcccttaaaatctatggtgcattca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39561948 |
gggagttataattactgacattactaaaattaccattgaagaaatttagcagactttggatgggatgcaagggtagcccttaaaatctatggttcattca |
39562047 |
T |
|
| Q |
210 |
gcagcatggagtatattaaagctcagaaaattaggtatacatgacaaaattttcttattaaatgacgtgaaaaattagaccaaggagttcagaaaattta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562048 |
gcagcatggagtatattaaagctcagaaaattaggtatacatgacaaaattttcttattaaatgacgtgaaaaattagaccaaggagttcagaaaattta |
39562147 |
T |
|
| Q |
310 |
tgttaaattcaataacatgaatcaagagtaaaagaaaacagtgataaagttttctcacctactaga |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562148 |
tgttaaattcaataacatgaatcaagagtaaaagaaaacagtgataaagttttctcacctactaga |
39562213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University