View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_high_4 (Length: 628)
Name: NF16077_high_4
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_4 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
| [»] scaffold0883 (1 HSPs) |
| | |
|
| [»] scaffold0095 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Original strand, 38817143 - 38817749
Alignment:
| Q |
1 |
cccacccatgttattattggaagggaggcagaaagcctctattaaatctgacagtggtgggggcaatatccctacaaagtctgacatagattatcaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817143 |
cccacccatgttattattggaagggaggcagaaagcctctattaaatctgacagggatgggggcaatatccctacaaagtctgacatagattatcaaaaa |
38817242 |
T |
|
| Q |
101 |
agaaaggctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcacatgtgctgctcaagcagttgctgaagcagaagccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817243 |
agaaaggctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcgcatgtgctgctcaagcagttgctgaagcagaagccg |
38817342 |
T |
|
| Q |
201 |
ccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggcagctattgcaaaagcagcagaaaaatcactaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817343 |
ccatggcagaagctgaagaggcaacaaaggaggcggaggctgcagaagcagaagcagatgcagcggcagctattgcaaaagcagcagaaaaatca----- |
38817437 |
T |
|
| Q |
301 |
atcgctgcggtaaatctcggcttttccttccgttgtaatactgttacataatacattaatagggatcatggaagattcttttgtatgcaacttagaagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38817438 |
----ctgcggtaaatctcggcttttccttccgttgtaatactgttacataatacattaatagggatcatggaagattctt-----------ttagaagca |
38817522 |
T |
|
| Q |
401 |
aactgacatagaatgatttatttannnnnnncatatattcacatatgacgttatttgggaaatgccaattttatttgttttatacataaaacctgcatgc |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
38817523 |
aactgacatagaatgatttattta-ttttttcatatattcacatatgacgttatttgggaaatgccaattttacttgttttatacataaaacctgcttgc |
38817621 |
T |
|
| Q |
501 |
gagggcataaagcccttctcttctcaaatccggtcttcaacaatatagaattgtgattaggctgctgagggatttaaattttcggagacttatttttagg |
600 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| || || | ||||||||| |||||||||| ||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
38817622 |
gagggcataaagcccatctcttctcaaaaccgatcatctaaaatatagaaatgtgattaggttgcagagggatttaaaatttcggagactttcttttagg |
38817721 |
T |
|
| Q |
601 |
catcgtagtgattatttggtattttaat |
628 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38817722 |
catcgtagtgattatttggtattttaat |
38817749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 103 - 282
Target Start/End: Original strand, 39457912 - 39458091
Alignment:
| Q |
103 |
aaaggctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcacatgtgctgctcaagcagttgctgaagcagaagccgcc |
202 |
Q |
| |
|
|||| |||||||||| || ||| | |||||| ||| |||||||||| ||||||| | ||| |||||||| |||||| ||||| |||||||||||| |
|
|
| T |
39457912 |
aaagtctgagatagatttagaaatagaaaaggtaaggtccatgtctgctcaagaggctgccgcatatgctgctcgagcagtcgctgatgcagaagccgcc |
39458011 |
T |
|
| Q |
203 |
atggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggcagctattgcaaaagc |
282 |
Q |
| |
|
|| || ||||||||||||||| | ||||||||||||||||||||||| || |||| |||||| | |||| ||||| |||| |
|
|
| T |
39458012 |
atagcggaagctgaagaggcagctaaggaggcagaggctgcagaagcggatgcagctgcagcagaagcttttgcagaagc |
39458091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 39465687 - 39465753
Alignment:
| Q |
350 |
aatacattaatagggatcatggaagattcttttgtatgcaacttagaagcaaactgacatagaatga |
416 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
39465687 |
aatacattaatagggcacacataagattcttttgtatgcaacttagaagcaaaatgacataggatga |
39465753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 39457838 - 39457883
Alignment:
| Q |
2 |
ccacccatgttattattggaagggaggcagaaagcctctattaaat |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
39457838 |
ccacccatgttattattggaagggaggcagaaaacctctatgaaat |
39457883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 39465211 - 39465301
Alignment:
| Q |
4 |
acccatgttattattggaagggaggcagaaagcctc-tattaaatctgacagtggtgggggcaatatccctacaaagtctgacatagatta |
93 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||||| | || | ||||||||||||| || ||||| ||||||| |
|
|
| T |
39465211 |
acccatgttattattggaaggggggcggaaagcctcatatgaaatttgacagggctgagagcaatatccctacgaattctgagttagatta |
39465301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 15996438 - 15996391
Alignment:
| Q |
215 |
gaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgca |
262 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
15996438 |
gaagaggcaatagaggaggctgaggctgcagaagcagatgcagatgca |
15996391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 39465325 - 39465381
Alignment:
| Q |
178 |
agcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggc |
234 |
Q |
| |
|
||||||| |||||| |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
39465325 |
agcagttactgaagtggaagccgccactacggaagctgaagaggcaacaaaggaggc |
39465381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 108 - 262
Target Start/End: Original strand, 12082591 - 12082745
Alignment:
| Q |
108 |
ctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcacatgtgctgctcaagcagttgctgaagcagaagccgccatggc |
207 |
Q |
| |
|
||||||| || || ||||| ||||| ||| |||||||||| |||||||| | | ||| |||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
12082591 |
ctgagatcgatttagaattagaaaaaataaggtccatgtctgcacaagaggcagccgcatatgctgctcgagcagttgctgaagcggaagccctcatggc |
12082690 |
T |
|
| Q |
208 |
agaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgca |
262 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
12082691 |
ggaggctgaagaggcaacaaaggaggcagaggctgcagaagcggaggcagatgca |
12082745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 12082524 - 12082594
Alignment:
| Q |
14 |
ttattggaagggaggcagaaagcctctattaaatctgacagtggtgggggcaatatccctacaaagtctga |
84 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||| | |||| | || | ||||||||||||| |||||||| |
|
|
| T |
12082524 |
ttattggaagggaggcaaaaaggctctatgaaattttacagggatgagagcaatatccctactaagtctga |
12082594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0883 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0883
Description:
Target: scaffold0883; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 4722 - 4609
Alignment:
| Q |
169 |
tgctgctcaagcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggca |
268 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||| || |||| |||||| | | |
|
|
| T |
4722 |
tgctgctcgagcagtcgctgatgcagaagccgccatagcggaagctgaagaggcagctaaggaggcagaggctgcagaagcggatgcagctgcagcagaa |
4623 |
T |
|
| Q |
269 |
gctattgcaaaagc |
282 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
4622 |
gcttttgcagaagc |
4609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 48515 - 48402
Alignment:
| Q |
169 |
tgctgctcaagcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggca |
268 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||| || |||| |||||| | | |
|
|
| T |
48515 |
tgctgctcgagcagtcgctgatgcagaagccgccatagcggaagctgaagaggcagctaaggaggcagaggctgcagaagcggatgcagctgcagcagaa |
48416 |
T |
|
| Q |
269 |
gctattgcaaaagc |
282 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
48415 |
gcttttgcagaagc |
48402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 22814 - 22748
Alignment:
| Q |
350 |
aatacattaatagggatcatggaagattcttttgtatgcaacttagaagcaaactgacatagaatga |
416 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
22814 |
aatacattaatagggcacacataagattcttttgtatgcaacttagaagcaaaatgacataggatga |
22748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 23290 - 23200
Alignment:
| Q |
4 |
acccatgttattattggaagggaggcagaaagcctc-tattaaatctgacagtggtgggggcaatatccctacaaagtctgacatagatta |
93 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||||| | || | ||||||||||||| || ||||| ||||||| |
|
|
| T |
23290 |
acccatgttattattggaaggggggcggaaagcctcatatgaaatttgacagggctgagagcaatatccctacgaattctgagttagatta |
23200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 23176 - 23120
Alignment:
| Q |
178 |
agcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggc |
234 |
Q |
| |
|
||||||| |||||| |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
23176 |
agcagttactgaagtggaagccgccactacggaagctgaagaggcaacaaaggaggc |
23120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 20150104 - 20150201
Alignment:
| Q |
164 |
acatgtgctgctcaagcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgc |
261 |
Q |
| |
|
|||| ||||||| ||| |||||| |||| ||||||||||| || ||||||||||||||||||||||||| | | |||||||||| || |||||||| |
|
|
| T |
20150104 |
acatatgctgctggagctgttgctaaagcggaagccgccattgcggaagctgaagaggcaacaaaggaggtactgactgcagaagcggatgcagatgc |
20150201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University