View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_41 (Length: 369)
Name: NF16077_high_41
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 8353679 - 8354019
Alignment:
| Q |
12 |
gaagaaaatttcaagagagtaaacaatcattttagtccctaaatgtgtgaaacgatgtcactataatccctgaacgtatcaaatttcaaaaacaaccccg |
111 |
Q |
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| T |
8353679 |
gaagaaaatttcaagagagtaaacaatcattttagtccctaaatgtgtgaaacgatgtcactataatccctgaacgtatcaaatttcaaaaacaaccccg |
8353778 |
T |
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| Q |
112 |
agaatgactaacaaaagatacatctgaggaccaaactaactaataaaagaagcatacacggaccgaactgactaataaaagacacattcaggtatacttt |
211 |
Q |
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| T |
8353779 |
agaatgactaacaaaagatacatttgaggaccaaactaactaataaaagaagcatacacggaccgaactgactaataaaagacacattcaggtatacttt |
8353878 |
T |
|
| Q |
212 |
aatagtaattttgatacatcgagggactgtagtgactgcctcacacattcaaggattaaaattactataatcaattcaagactaattcattttataaagg |
311 |
Q |
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| T |
8353879 |
tatagtaattttgatacatcgagggactgtagtgactgcctcacacattcaaggattaaaattactataatcaattcaagactaattcattttataaagg |
8353978 |
T |
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| Q |
312 |
atagacacacctcaactctttgcctaaagagaagatatctt |
352 |
Q |
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| T |
8353979 |
atagacacacctcaactctttgcctaaagagaagatatctt |
8354019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 10537572 - 10537492
Alignment:
| Q |
116 |
tgactaacaaaagatacatctgaggaccaaactaactaataaaagaagcatacacggaccgaactgactaataaaagacac |
196 |
Q |
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|||||||| ||| | |||| ||||||||||||||| || | ||||| |||||| | || |||||||||||||||||||| |
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| T |
10537572 |
tgactaacgaaaaacacatatgaggaccaaactaatcaacagaagaaacatacaaaggccaaactgactaataaaagacac |
10537492 |
T |
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