View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_52 (Length: 339)
Name: NF16077_high_52
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 6214761 - 6214448
Alignment:
| Q |
1 |
ctatactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctacca |
100 |
Q |
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| T |
6214761 |
ctatactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctgcca |
6214662 |
T |
|
| Q |
101 |
actataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaatatcacttt |
200 |
Q |
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| T |
6214661 |
actataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaatatcacttt |
6214562 |
T |
|
| Q |
201 |
ctttatatgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaa |
300 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6214561 |
ctttatgtgtaacaatgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataatctcaacaaagtattcaataaa |
6214462 |
T |
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| Q |
301 |
ttccttaaaactac |
314 |
Q |
| |
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|||||||||||||| |
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| T |
6214461 |
ttccttaaaactac |
6214448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 6177239 - 6176937
Alignment:
| Q |
15 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
114 |
Q |
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||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
|
| Q |
115 |
aatatcaagtggtataagcatttggatgtacaggta--ataaagtttataa--tgtaatatcacatcaa----agacattatcaatatcactttctttat |
206 |
Q |
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| T |
6177139 |
aatatcaagtggtataagcatatggatatacaggtatgatatactttataaattgatctgtcacatcaaaaatagatattatcaa-------tgctttat |
6177047 |
T |
|
| Q |
207 |
atgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattcctt |
306 |
Q |
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| T |
6177046 |
gtctaacattactttgttttg---ttatctaataataatgcagtggagatatagatggacgtgttcctataacctcaacaaagtattcaataaattcctt |
6176950 |
T |
|
| Q |
307 |
aaaactacctgtg |
319 |
Q |
| |
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|||||| |||||| |
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| T |
6176949 |
aaaactgcctgtg |
6176937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 6207025 - 6206916
Alignment:
| Q |
41 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
140 |
Q |
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|||||||||||||||||||||| | || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
|
| Q |
141 |
tgtacaggta |
150 |
Q |
| |
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| |||||||| |
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| T |
6206925 |
tatacaggta |
6206916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 6206827 - 6206747
Alignment:
| Q |
239 |
taataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtg |
319 |
Q |
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|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6206827 |
taataatgcagtggtgatttagatgggcgtgttcccataacctcaacaaagtattcaataaattccttaaaactgcctgtg |
6206747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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