View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_54 (Length: 328)
Name: NF16077_high_54
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_54 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4376866 - 4376654
Alignment:
| Q |
1 |
ttgatgtgcttcgtttggtcaatacaatcgatgaaccagccaccggtttcatttatgaagcaatggagcaagctaaagattaaatacgaaggagtctttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
4376866 |
ttgatgtgcttcgtttggtcaatacaatcgatgaaccagccactggtttcatttatgaagcaatggagaaagctaaagatgaaatacgaaggggtctttc |
4376767 |
T |
|
| Q |
101 |
cgaaggtggcaccgaaaggtaaatattttcatcaggatccattatcgacattagtttttataattgattttttgtttcgatatcttggattgaactgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4376766 |
cgaaggtggcaccgaaaggtaaatattttcatcaggatccattatcaacattagcttttataattgattttttgtttcgatatcttggattgaactgtta |
4376667 |
T |
|
| Q |
201 |
aaagtaattcaac |
213 |
Q |
| |
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||||||||||||| |
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| T |
4376666 |
aaagtaattcaac |
4376654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4384439 - 4384227
Alignment:
| Q |
1 |
ttgatgtgcttcgtttggtcaatacaatcgatgaaccagccaccggtttcatttatgaagcaatggagcaagctaaagattaaatacgaaggagtctttc |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |
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| T |
4384439 |
ttgatgtgcttcgtttggtcaattcaatcgatgaaccagccaccggtttcatttatgaagcaatggagaaagctaaagacgaaatacgaaggggtctttt |
4384340 |
T |
|
| Q |
101 |
cgaaggtggcaccgaaaggtaaatattttcatcaggatccattatcgacattagtttttataattgattttttgtttcgatatcttggattgaactgtta |
200 |
Q |
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| |||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4384339 |
caaaggtggcacagataggtgaatattttcatcaggatccattatcaacattagtttttataattgattttttgtttcgatatcttggtttgaactgtta |
4384240 |
T |
|
| Q |
201 |
aaagtaattcaac |
213 |
Q |
| |
|
||||||||||||| |
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| T |
4384239 |
aaagtaattcaac |
4384227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4389551 - 4389342
Alignment:
| Q |
1 |
ttgatgtgcttcgtttggtcaatacaatcgatgaaccagccaccggtttcatttatgaagcaatggagcaagctaaagattaaatacgaaggagtctttc |
100 |
Q |
| |
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||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
4389551 |
ttgatgtgctttgtttggtcaattcaattgatgaaccagccaccggtttcatttatgaagcaatggagaaagctaaagatgaaatacgaaggggtctttc |
4389452 |
T |
|
| Q |
101 |
cgaaggtggcaccgaaaggtaaatattttcatcaggatccattatcgacattagtttttataattgatt-ttttgtttcgatatcttggattgaactgtt |
199 |
Q |
| |
|
|||| |||| |||||||| ||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
4389451 |
taaagggggcatagaaaggtatatattttcagcaggatcgattatcaacattagtttttataattgatttttttgtttcgatatcttggtttgaactgtt |
4389352 |
T |
|
| Q |
200 |
aaaagtaatt |
209 |
Q |
| |
|
|||||||| |
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|
| T |
4389351 |
tgaagtaatt |
4389342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4415003 - 4415128
Alignment:
| Q |
1 |
ttgatgtgcttcgtttggtcaatacaatcgatgaaccagccaccggtttcatttatgaagcaatggagcaagctaaagattaaatacgaaggagtctttc |
100 |
Q |
| |
|
|||| |||||| ||||||||| | |||| ||||| ||||||||||||| ||||||||| ||| |||||||||||||||| | ||||||||||||||||| |
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| T |
4415003 |
ttgaagtgctttgtttggtcagttcaatagatgagccagccaccggttccatttatgaggcattggagcaagctaaagaggagatacgaaggagtctttc |
4415102 |
T |
|
| Q |
101 |
cgaaggtggcaccgaaaggtaaatat |
126 |
Q |
| |
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| |||||| || ||||||||||||| |
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| T |
4415103 |
caaaggtgtcatagaaaggtaaatat |
4415128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 4389307 - 4389244
Alignment:
| Q |
247 |
atgcctctatgggagatcattgacgaaagatgggacggacgactccacggccctttgcatgcag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4389307 |
atgcctctatgggagatcattgacgaaagatgggacgaacgactccacggccctttgcatgcag |
4389244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 4376620 - 4376558
Alignment:
| Q |
247 |
atgcctctatgggagatcattgacgaaagatgggacggacgactccacggccctttgcatgca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4376620 |
atgcctctatgggagatcattgacgaaagatgggacgaacgactccacggccctttgcatgca |
4376558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 4384194 - 4384131
Alignment:
| Q |
247 |
atgcctctatgggagatcattgacgaaagatgggacggacgactccacggccctttgcatgcag |
310 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
4384194 |
atgcctctatgggagatcattgatgaaagatgggacaaacgactccacggccccttgcatgcag |
4384131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 5725993 - 5726063
Alignment:
| Q |
6 |
gtgcttcgtttggtcaatacaatcgatgaaccagccaccggtttcatttatgaagcaatggagcaagctaa |
76 |
Q |
| |
|
|||||||||||||||| | |||| || |||||||||| ||||||||||| || ||||||||| ||||||| |
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|
| T |
5725993 |
gtgcttcgtttggtcagttcaattgacgaaccagccatgggtttcatttacgaggcaatggagaaagctaa |
5726063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 4365263 - 4365210
Alignment:
| Q |
48 |
ttcatttatgaagcaatggagcaagctaaagattaaatacgaaggagtctttcc |
101 |
Q |
| |
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||||||||||| ||||||||| |||||||||| | ||||| |||||||||||| |
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|
| T |
4365263 |
ttcatttatgaggcaatggagagagctaaagataagatacggaggagtctttcc |
4365210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 3595557 - 3595619
Alignment:
| Q |
247 |
atgcctctatgggagatcattgacgaaagatgggacggacgactccacggccctttgcatgcag |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| |
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| T |
3595557 |
atgcctctatgggagatcattgatgaaagatgggacgaac-actccacggccctttgcatgcag |
3595619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 3595468 - 3595526
Alignment:
| Q |
155 |
tttttataattgatttt-ttgtttcgatatcttggattgaactgttaaaagtaattcaa |
212 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||| |
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| T |
3595468 |
tttttataattgatttttttgtttcgatatcttggtttgaactggtgaaagtaattcaa |
3595526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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