View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_high_58 (Length: 318)

Name: NF16077_high_58
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_high_58
NF16077_high_58
[»] chr1 (1 HSPs)
chr1 (13-301)||(44975560-44975850)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 44975560 - 44975850
Alignment:
Q  13 gagatgaaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaagggtttcaagatccaaaacttga 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44975560 gagatggaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaagggtttcaagatccaaaacttga 44975659  T
Q  113 aggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggttttgttatttcatttgattttct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44975660 aggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggttttgttatttcatttgattttct 44975759  T
Q  213 ataaagtgtataaatatcatcatgatctgaaatacatgcatgcagccacaaac--aaagtttgtttcaaagtgagaaagttgactctttct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||| ||||||||||||||||||    
T  44975760 ataaagtgtataaatatcatcatgatctgaaatacatgcatgcggccataaacataaagtttgtttcaaagttagaaagttgactctttct 44975850  T

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