View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_6 (Length: 622)
Name: NF16077_high_6
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 271 - 604
Target Start/End: Original strand, 24177213 - 24177546
Alignment:
| Q |
271 |
agacatggatgcatacctgttatgccttagtaccaataatttgtctttctccagtggtcctcnnnnnnnnnnnnnnnnnnnnnnnnctagtggtcctgct |
370 |
Q |
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| T |
24177213 |
agacatggatgcatacctgttatgccttagtaccaataatttgtctttctctagtggtcctctatttattttttatttatttatttctagtggtcctgct |
24177312 |
T |
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| Q |
371 |
tttattcttcattcctttctcttcctctcaaacaattcaattttttcagtccacattaattaaattcatgtggctttaatataattgtggttgctctgtg |
470 |
Q |
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| T |
24177313 |
tttattcttcattcctttctcttcctctcaaacaattcaattttttcagtccacattaattaaattcatgtggctctaatataattgtggttgctctttg |
24177412 |
T |
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| Q |
471 |
tgtatgattcttttctatttacatggtatctacctttttgactagctcaatttttatgagaaggaaatatatgtacactactgcaaaatgaaatcataga |
570 |
Q |
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| T |
24177413 |
tgtatgattcttttctatttacatggtatctacctttttgactagctcaatttttatgagaaggaaatatatgtaaactactgcaaaatgaaatcataga |
24177512 |
T |
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| Q |
571 |
cataggtgcatgaagaaagtgtgttctgacaatc |
604 |
Q |
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| T |
24177513 |
cataggtgcatgtagaaagtgtgtaccgacaatc |
24177546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 24176932 - 24177190
Alignment:
| Q |
15 |
cagagatggacaccaattgggttgaaagatcacaattcagtgattcatctgcactttaagactcattttctgacaatgactttcaaattcctctacacat |
114 |
Q |
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| T |
24176932 |
cagagatggacaccaattgggttgaaagatcacaatttagtgattcatttacactttaagactcattttctgacaatgactttctaattcctctacacat |
24177031 |
T |
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| Q |
115 |
actttgaatgannnnnnnagggttgaactgagatattgtacagaagtatagtgacaagtctcttactaatccaagctactttttagttagttagttatta |
214 |
Q |
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| T |
24177032 |
actttgaatgatttttttatggttgaactgagacattgtacagaagtatagtgacaagtctcttactaatccaagctactttttagttagttagttatta |
24177131 |
T |
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| Q |
215 |
gtattaaaacatagcagaatggttcagttgagtcagagatctcaacagtttgggtgaga |
273 |
Q |
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| T |
24177132 |
gtattaaaacatagcagaatggttcagttgagtcagagatctcaacagtttgggtgaga |
24177190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 24183505 - 24183574
Alignment:
| Q |
197 |
ttagttagttagttattagtattaaaacatagcagaatggttcagttgagtcagagatctcaacagtttg |
266 |
Q |
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| T |
24183505 |
ttagttagttagttattagtattaaaacaaagcagaatggttcagatgagtcagagatctcaacagtttg |
24183574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 24183642 - 24183680
Alignment:
| Q |
293 |
tgccttagtaccaataatttgtctttctccagtggtcct |
331 |
Q |
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| T |
24183642 |
tgccttagtaccaataatttgtctttctctagtggtcct |
24183680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 24184567 - 24184637
Alignment:
| Q |
453 |
aattgtggttgctctgtgtgtatgattcttttctatttacatggtatcta-cctttttgactagctcaatt |
522 |
Q |
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| T |
24184567 |
aattgtgtttgctctgtgtacatgatccttctctgtttacatggtatctacccatttggactagctcaatt |
24184637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 9440439 - 9440511
Alignment:
| Q |
135 |
ggttgaactgagatattgtacagaagtatagtgacaagtctcttactaatccaagctactttttagttagtta |
207 |
Q |
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| T |
9440439 |
ggttgaactaagacattgtacaaaagtatagtaacatgacacttattaatcaaagctaccttttagttagtta |
9440511 |
T |
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