View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_61 (Length: 314)
Name: NF16077_high_61
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_61 |
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| [»] chr6 (8 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 4376201 - 4375889
Alignment:
| Q |
1 |
aattgtaaaatacatagcacttacttgcttatcttaattgtatttgtatttgtttaggtccatgctaagagaagaaaccctttgtggcaaaatatttata |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4376201 |
aattgtaaaatacatagcacttacttgcttatgctaattgtatttgtatttgtt-aggtccatgctaagagaagaaactctttgtggcaaaatatttata |
4376103 |
T |
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| Q |
101 |
atgatgttctctttgtcatggctaattcaaaattggctgaagacaaagcaagatggtttattgagctacttcaaaatctgaaggataatggaaacagtga |
200 |
Q |
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| T |
4376102 |
atgattctctctttgtcatggctaattcaaaattggctgaagacaaagcaagatggtttattgagctacttcaaaatctgaaggataatggaaacagtga |
4376003 |
T |
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| Q |
201 |
aggtactccatatcttaagtctctacatgacgtgattgctgatttgtatgatgaatatggagttggagatgaatttcaagatggagacaaagatgaagat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
4376002 |
aggtactccatatcttaagtctctacatgacgtgattgctgatttgtatgatgaatatggagttggagatgaagttcaagatagagacaaagatgaagat |
4375903 |
T |
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| Q |
301 |
caaatggaagattc |
314 |
Q |
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|||||||||||||| |
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| T |
4375902 |
caaatggaagattc |
4375889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 4388896 - 4388597
Alignment:
| Q |
1 |
aattgtaaaatacatagcacttacttgcttatcttaattgtatttgtatttgtttaggtccatgctaagagaagaaaccctttgtggcaaaatatttata |
100 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| | ||||| |
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| T |
4388896 |
aattgtaaaatacctagcacttacttgcttatattaattgtatttgaatttgtttaggtccatgctaagaacagaaaccttttgtggcaaaaaacttata |
4388797 |
T |
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| Q |
101 |
atgatgttctctttgtcatggctaattcaaaattggctgaagacaaagcaagatggtttattgagctacttcaaaatctgaaggataatggaaacagtga |
200 |
Q |
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| T |
4388796 |
atgatgttgtctatgtcatggctaattcaaaattggctgaagagaaagccagatggtttgttgagctagttcaaaatctgaaggataatggaagcattga |
4388697 |
T |
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| Q |
201 |
aggtactccatatcttaagtctctacatgacgtgattgctgatttgtatgatgaatatggagttggagatgaatttcaagatggagacaaagatgaagat |
300 |
Q |
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| T |
4388696 |
aggtactccaaatctgaaatccctacatgatgtgattgcttatttgtatgatgaatatggagttggagatgaagttgaagatggagacgaagatgaagat |
4388597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 310
Target Start/End: Complemental strand, 4383745 - 4383482
Alignment:
| Q |
29 |
ttatcttaattgtatttgtatttgtttaggtccatgctaagagaagaaaccctttgtggcaaaatatttataatgatgttctctttgtcatggctaattc |
128 |
Q |
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||||||||||||||| | |||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||| |
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| T |
4383745 |
ttatcttaattgtatctatatttgttcaggttcatgctaagagaagaaaccttttgtggcaaaaggcttataatgatgctgtctttgtcatggctaattc |
4383646 |
T |
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| Q |
129 |
aaaattggctgaagacaaagcaagatggtttattgagctacttcaaaatctgaaggataatggaaacagtgaaggtactccatatcttaagtctctacat |
228 |
Q |
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| T |
4383645 |
aaaattggctgtagagaaagctagaagggttgtttggcga------------------aatggaaaaattgaagctactcgatatctaaagtctcaacgt |
4383564 |
T |
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| Q |
229 |
gacgtgattgctgatttgtatgatgaatatggagttggagatgaatttcaagatggagacaaagatgaagatcaaatggaag |
310 |
Q |
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| T |
4383563 |
gatgtgattgctgatttgtatgatgaatatggagttggagacgaagatgaagatggagacgaagatgaagatcaaatggaag |
4383482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 4415663 - 4415781
Alignment:
| Q |
22 |
tacttgcttatcttaattgtatttgtatttgtttaggtccatgctaagagaagaaaccctttgtggcaaaatatttataatgatgttctctttgtcatgg |
121 |
Q |
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||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||| |||| ||||||| | |||| ||||| | |||||||||| |
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| T |
4415663 |
tacttgcttatattaattgtatttgtattggtataggtccacgctaagagaagaaaccgtttgaggcaaaagacccgtaataatgttgtttttgtcatgg |
4415762 |
T |
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| Q |
122 |
ctaattcaaaattggctga |
140 |
Q |
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| T |
4415763 |
ttaattcaaaattagctga |
4415781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 4415876 - 4415931
Alignment:
| Q |
204 |
tactccatatcttaagtctctacatgacgtgattgctgatttgtatgatgaatatg |
259 |
Q |
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| T |
4415876 |
tactccatatctgaagtctctatatgatgtgattgctgatttgcgtgatgaatatg |
4415931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 5726658 - 5726707
Alignment:
| Q |
22 |
tacttgcttatcttaattgtatttgtatttgtttaggtccatgctaagag |
71 |
Q |
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| T |
5726658 |
tacttgctaatcttaattctatttgtatttgtttaggttcacgctaagag |
5726707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 4364556 - 4364520
Alignment:
| Q |
101 |
atgatgttctctttgtcatggctaattcaaaattggc |
137 |
Q |
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| T |
4364556 |
atgatgttctttttgtcatggctaattcaaaattggc |
4364520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 4368961 - 4368926
Alignment:
| Q |
102 |
tgatgttctctttgtcatggctaattcaaaattggc |
137 |
Q |
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| T |
4368961 |
tgatgttctttttgtcatggctaattcaaaattggc |
4368926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 3595962 - 3596282
Alignment:
| Q |
1 |
aattgtaaaatacatagcacttacttgcttatcttaattgt------atttgtatttgtttaggtccatgctaagagaagaaaccctttgtggcaaaata |
94 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
3595962 |
aattgtaaaatacatagtacttaattgcttatcttaattgtatttgtatttgtatttgtttaggtccatgctaagagaagaaaccttttgtggcaaaaaa |
3596061 |
T |
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| Q |
95 |
tttataatgatgttctctttgtcatggctaattcaaaattggctgaagacaaagcaagatggtttattgagctacttcaaaatctgaaggataatggaaa |
194 |
Q |
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| T |
3596062 |
cttataatgatgttgtctttgtcatggctaattcaaaattggctgaagagaaagctagatggtttgttgagcgaattcaaaatctgaaggataatggaaa |
3596161 |
T |
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| Q |
195 |
cagtgaaggtactccatatcttaagtctctacatgacgtgattgctgatttgtatgatgaatatggagttggagatga-atttcaagatggagacaaaga |
293 |
Q |
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|| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||| ||| |||| |
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| T |
3596162 |
cattgatggtactccatatctgaagtctctacatgatgtgattgctgatttgtatgatgaatatggagttggagatgagagttgaagatgaagatgaaga |
3596261 |
T |
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| Q |
294 |
tgaagatcaaatggaagattc |
314 |
Q |
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|||||||||||||||| |||| |
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| T |
3596262 |
tgaagatcaaatggaatattc |
3596282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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