View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_63 (Length: 310)
Name: NF16077_high_63
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_63 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 4654697 - 4654573
Alignment:
| Q |
23 |
aataaatattaatttaacaaattaactattaccatttgtcattaaaaatagactaatgttagcaatatgtcatggcctctgcattagtccctatatatca |
122 |
Q |
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| T |
4654697 |
aataaatattaatttaacaaattaactattaccatttgtcattaaaaagagactaatgttagcaatatgtcatggcctctacattagtccgtatatatca |
4654598 |
T |
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| Q |
123 |
tgtgatagtttgagacttggtgtga |
147 |
Q |
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| T |
4654597 |
tgtgatagtttgagacttggtgtga |
4654573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 4654552 - 4654433
Alignment:
| Q |
178 |
ggttaatcagtccataatattataagtattactcacaggttatgtacgaatacttttcctgtaagaaaaatg-aaagaata-ttttttggttttaacatt |
275 |
Q |
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| T |
4654552 |
ggttaatcagtccataatattataagtattactcacaggttatgtacgaatacttttcctgtaagaaaaatgttaagaatatttttttggttttaacatt |
4654453 |
T |
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| Q |
276 |
tcggtttcaagagttgatgt |
295 |
Q |
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| T |
4654452 |
tcggtttcaagagttgatgt |
4654433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 35940483 - 35940528
Alignment:
| Q |
25 |
taaatattaatttaacaaattaactattaccatttgtcattaaaaa |
70 |
Q |
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| T |
35940483 |
taaatattaatttaataaattaactattaacatttgtcattaaaaa |
35940528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 29086321 - 29086365
Alignment:
| Q |
25 |
taaatattaatttaacaaattaactattaccatttgtcattaaaa |
69 |
Q |
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| T |
29086321 |
taaatattaatctaacaaattaactactaacatttgttattaaaa |
29086365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 44167939 - 44167983
Alignment:
| Q |
26 |
aaatattaatttaacaaattaactattaccatttgtcattaaaaa |
70 |
Q |
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| T |
44167939 |
aaatattaattttacaaattaactacgaacatttgtcattaaaaa |
44167983 |
T |
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