View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_64 (Length: 309)
Name: NF16077_high_64
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_64 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30413388 - 30413150
Alignment:
| Q |
1 |
tttctcccattaaaccttcttagatacttccattgaagttgctattatgacatttcatttatttcttcacttaaagatacatttggctctttttcaatgt |
100 |
Q |
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| T |
30413388 |
tttctcccattaaaccttcttagatacttccattgaagttgctattatgacatttcatttatttcttcacttaaagatacatttggctctttttcaatgt |
30413289 |
T |
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| Q |
101 |
tgttctaaaccactaatgcttgatatatgaccctttatactttgatggttgtttgatgttgagattaagagctctccacaccactaattgtgtcattaga |
200 |
Q |
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| T |
30413288 |
tgttctaaaccactaatgcttgatatatgaccctttatactttgatggttgtttgatgttgagattaagagctctccacaccactaattgggtcattaga |
30413189 |
T |
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| Q |
201 |
attctgaagtggttccaatgatctcacaatcttttctat |
239 |
Q |
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| T |
30413188 |
attctgaagtggttccaatgatctcacaatcttttctat |
30413150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 299
Target Start/End: Complemental strand, 30412408 - 30412269
Alignment:
| Q |
160 |
tgagattaagagctctccacaccactaattgtgtcattagaattctgaagtggttccaatgatctcacaatcttttctatgcttggtctatattttggtc |
259 |
Q |
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| T |
30412408 |
tgagattaagagctccgtactccacctactgtgtcatcggaatgctgaagttgctccagtgatctcacaatctcttgtatttttggtctatattctggtt |
30412309 |
T |
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| Q |
260 |
tttccgacagacattgaatcacaatgtgagctactttcat |
299 |
Q |
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| T |
30412308 |
tttcagacagacattgaattataatatgagctaatttcat |
30412269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 30423531 - 30423426
Alignment:
| Q |
191 |
tgtcattagaattctgaagtggttccaatgatctcacaatcttttctatgcttggtctatattttggtctttccgacagacattgaatcacaatgtgagc |
290 |
Q |
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||||||| |||| ||||||| ||||||| |||||||| | || || ||| |||||||||||||| || | ||||||||||| |||| ||| ||||| |
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| T |
30423531 |
tgtcattggaatcctgaagttgttccaacgatctcaccacctcgtcaatgtttggtctatatttttgttctgccgacagacatcgaattgcaacatgagc |
30423432 |
T |
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| Q |
291 |
tacttt |
296 |
Q |
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|||||| |
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| T |
30423431 |
tacttt |
30423426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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