View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_high_69 (Length: 299)
Name: NF16077_high_69
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_69 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 45993311 - 45993042
Alignment:
| Q |
9 |
gagatgaaagattgctgctgaaaaaggtcacaaggaggccatatatatacatgtatgatatgatcttgttgtgttccgaaaatcatgagtcaagaaaaca |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45993311 |
gagattaaagattgctgctgaaaaaggtcacaaggaggccatatacatgtatgtatggtatgatcttgttgtgttccgaaaatcatgagtcaagaaaaca |
45993212 |
T |
|
| Q |
109 |
aggactttaattgagcatatgcgtttcttgaggaagtccaaatgtattgtgagttcaaggagtaaggttaaatatttaacaaaagatatgtggaaaaata |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45993211 |
aggactt-----gagcatatgcgtttcttgaggaagtccaaatgtattgtgagttcaaggagtaaggttaaatatttaacaaaagatatgtggaaaaata |
45993117 |
T |
|
| Q |
209 |
atgggatgttaatgcgcaatcaaattgctctatgcaactcgaagagcacatgcgagggatggagagtgaagaaag |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45993116 |
atgggatgttaatgcgcaatcaaattgctctatgcaactcgaagagcacatgcgagggatggagagtgaagaaag |
45993042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 35454462 - 35454416
Alignment:
| Q |
237 |
tctatgcaactcgaagagcacatgcgagggatggagagtgaagaaag |
283 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
35454462 |
tctatgcaactccaagagcacatgcaagggatggagagtgaagaaag |
35454416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University