View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_78 (Length: 279)
Name: NF16077_high_78
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 35360029 - 35360291
Alignment:
| Q |
1 |
gtaccagacaaattcaagcaaaatgtgtttgatacaatgtcggtaaattacactctcttttagaagtcacatttcagcctttagatgtaactaatcatgg |
100 |
Q |
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| T |
35360029 |
gtaccagacaaattcaagcaaaatgtgtttgatacaaggtcggtaaattacactctcttttagaagtcacatttcagcctttagatgtaactaatcatgg |
35360128 |
T |
|
| Q |
101 |
ccatgtttggcaatttcattcaatttata-nnnnnnnaggattttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtctcttctct |
199 |
Q |
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| T |
35360129 |
ccatgtttggcaatttcattcaatttatattttttttaggattttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtctcttctct |
35360228 |
T |
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| Q |
200 |
gtctctagcctaaacacagcaaataattgtatatttggagaaatgttattttcacacgccttc |
262 |
Q |
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| T |
35360229 |
gtctctagcctaaacacagcaaataattgtatatttgaagaaatgttattttcacacgccttc |
35360291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 35355737 - 35356009
Alignment:
| Q |
2 |
taccagacaaattcaagcaaaa-tgtgtttgatacaatgtcggtaaattacactctcttttagaagtcacatttcagcctttagatgtaactaatcatgg |
100 |
Q |
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|||||||||||||||||||||| | |||| |||| ||||| |||| ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
35355737 |
taccagacaaattcaagcaaaaatatgttcgatataatgttggtagattgcactcacttttagaagtcacatttcagcttttaaatgtaactaatcatga |
35355836 |
T |
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| Q |
101 |
ccatgtttggcaatttcattcaatttata-nnnnnnnaggattttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtctctt-ctc |
198 |
Q |
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| T |
35355837 |
ctatgtttagcaatttcattcgatttatatttcttctaggattttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtcttttgttc |
35355936 |
T |
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| Q |
199 |
tgtctctagcctaaacaca-gcaaataattgtatatttggagaaatgttattttcacacgccttcatctcact |
270 |
Q |
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| T |
35355937 |
tgtctctagcctaaacaaaggttaggaataatatttttggagaaatgttgttttcacacgccttcatttcact |
35356009 |
T |
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