View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_high_79 (Length: 278)
Name: NF16077_high_79
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_79 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 37794111 - 37794383
Alignment:
| Q |
1 |
tcatcttcccagaaaatctgcatgtttttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37794111 |
tcatcttcccagaaaatctgcatgtttttggattccatcagaaattcaatatcttcattcttgaatttcagcacaaaacccaatgtgatcaattcagata |
37794210 |
T |
|
| Q |
101 |
gggcaggaacaaaatcatgattctcagacaaaataccttctgatattgtttcagaaaaatatgtcgcatatttcagtgcatttccccgaggctcatccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37794211 |
gggcaggaacaaaatcatgattctcagacaaaacaccttctgatattgtttcagagaaatatgtcgcatatttcagtgcatttccccgaggctcatccaa |
37794310 |
T |
|
| Q |
201 |
cttctggatgaaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtgatgatgtcc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37794311 |
cttctggatgaaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtaatgatgtcc |
37794383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 2919250 - 2919512
Alignment:
| Q |
11 |
agaaaatctgcatgtttttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagatagggcaggaac |
110 |
Q |
| |
|
|||||||||| | || ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| || |||||||| |
|
|
| T |
2919250 |
agaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcagagagagcaggaac |
2919349 |
T |
|
| Q |
111 |
aaaatcatgattctcagacaaaataccttctgatattgtttcagaaaaatatgtcgcatatttcagtgcatttccccgaggctcatccaacttctggatg |
210 |
Q |
| |
|
|| ||||||||||||| |||||| |||||||||||||| |||||| |||||||| ||||||||||||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
2919350 |
aagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttcagtgcattacccataggcttatccatcttctggatg |
2919449 |
T |
|
| Q |
211 |
aaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtgatgatgtcc |
273 |
Q |
| |
|
|| ||||| ||||||| | |||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
2919450 |
aagaacttagaacttttcttttcccagcgtaccattttgtcttctttctttgtaatgatgtcc |
2919512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 3014013 - 3013791
Alignment:
| Q |
28 |
ttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagatagggcaggaacaaaatcatgattctcag |
127 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||||| |||||||| |||||||||||||||||| | ||| | || ||||||| | ||||||||||||| |
|
|
| T |
3014013 |
ttggattccattagaaaatcaatttcttcattcttgaatttcatcacaaaacccaatgtgattagttcggccagtgcaggaatatcatcatgattctcac |
3013914 |
T |
|
| Q |
128 |
acaaaataccttctgatattgtttcagaaaaatatgtcgcatatttcagtgcatttccccgaggctcatccaacttctggatgaaaaacttggaactttg |
227 |
Q |
| |
|
||||||||| || ||||||| |||||| |||| ||| ||||| |||| || || || || |||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
3013913 |
gcaaaataccctcggatattgcttcagagaaatttgtagcatacttcaatgaatcaccaagaactccatccatcttctggatgataaacttgcaactttg |
3013814 |
T |
|
| Q |
228 |
cctttcccagcgtaccattttgt |
250 |
Q |
| |
|
|||||||| |||||| |||||| |
|
|
| T |
3013813 |
actttcccaacgtacccttttgt |
3013791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 2945416 - 2945557
Alignment:
| Q |
34 |
tccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagatagggcaggaacaaaatcatgattctcagacaaaa |
133 |
Q |
| |
|
||||| ||||| ||||| |||||||||| |||||||| |||| ||||||||||||| | ||||| || ||||||||| ||||||||||||||| ||||| |
|
|
| T |
2945416 |
tccatgagaaaatcaatttcttcattcttgaatttcatcacataacccaatgtgattagttcagccagtgcaggaacataatcatgattctcaggcaaaa |
2945515 |
T |
|
| Q |
134 |
taccttctgatattgtttcagaaaaatatgtcgcatatttca |
175 |
Q |
| |
|
|||| || ||||||| |||||| |||| ||| ||||| |||| |
|
|
| T |
2945516 |
taccctcggatattgcttcagagaaatttgtagcataattca |
2945557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 269
Target Start/End: Original strand, 2928769 - 2929010
Alignment:
| Q |
28 |
ttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagatagggcaggaacaaaatcatgattctcag |
127 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||||| |||||||| ||||| || | |||||| | ||| || || |||| |||| ||||||||||||| |
|
|
| T |
2928769 |
ttggattccattagaaaatcaatttcttcattcttaaatttcagaacaaagcctagtgtgattagttccgagagtgcagcaacatgatcatgattctcac |
2928868 |
T |
|
| Q |
128 |
acaaaataccttctgatattgtttcagaaaaatatgtcgcatatttcagtgcatttccccgaggctcatccaacttctggatgaaaaacttggaactttg |
227 |
Q |
| |
|
||||||||| || ||||||| |||||| ||| ||| ||| || ||| ||||| || || || |||| ||||||||||| ||||||| | ||||| |
|
|
| T |
2928869 |
gcaaaataccctcggatattgcttcagagaaacttgtagcacatctcaatgcatcaccaggaacttcctccatcttctggatgataaacttgcagctttg |
2928968 |
T |
|
| Q |
228 |
cctttcccagcgtaccattttgtcatctttctttgtgatgat |
269 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||| ||||| |
|
|
| T |
2928969 |
actttcccaacgtacccttttgtttgctttctttgtaatgat |
2929010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 2913183 - 2913247
Alignment:
| Q |
28 |
ttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacc-caatgtgatca |
91 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
2913183 |
ttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaaacctcaatgtgatca |
2913247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 28023124 - 28023396
Alignment:
| Q |
1 |
tcatcttcccagaaaatctgcatgtttttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagata |
100 |
Q |
| |
|
||||| || ||||||||||| | ||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28023124 |
tcatcctcacagaaaatctgtaagttgttggattccatcaggaattcaatatcttcattcttgaatttcagcacaaaacccaatgtgatcaattcagaga |
28023223 |
T |
|
| Q |
101 |
gggcaggaacaaaatcatgattctcagacaaaataccttctgatattgtttcagaaaaatatgtcgcatatttcagtgcatttccccgaggctcatccaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
28023224 |
gggcaggaacaaaatcgtgattctcagacaaaacaccttctgatattgtttcagagacatatgtggcatatttcagtgcatttctctgaggctcatccaa |
28023323 |
T |
|
| Q |
201 |
cttctggatgaaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtgatgatgtcc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
28023324 |
cttctggatgaaaaacttggaactttgcctttcccagcgaaccattttgtcatctttctttgtaacgatgtcc |
28023396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 1508340 - 1508102
Alignment:
| Q |
28 |
ttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagatagggcaggaacaaaatcatgattctcag |
127 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||||| ||||||||| | ||| || |||||||| | || |||||| ||||||||| ||||||||| ||| |
|
|
| T |
1508340 |
ttggattccataagaaaatcaatttcttcattcttgaatttcagaaaaaaccctaatgtgattagtttagatagtgcaggaacatgatcatgattttcat |
1508241 |
T |
|
| Q |
128 |
acaaaataccttctgatattgtttcagaaaaatatgtcgcatatttcagtgcatttccccgaggctcatccaacttctggatgaaaaacttggaactttg |
227 |
Q |
| |
|
||||| ||| || ||||||| |||||| |||| ||| ||||||||| || || | | |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
1508240 |
gcaaaacaccctcagatattgcttcagagaaatttgtaacatatttcaatgaatcctcac------catccatcttctggatgataaacttggaactttg |
1508147 |
T |
|
| Q |
228 |
cctttcccagcgtaccattttgtcatctttctttgtgatgatgtc |
272 |
Q |
| |
|
|||||||| || ||| |||||| |||||||||| |||||||| |
|
|
| T |
1508146 |
actttcccaacgcacccttttgtttgctttctttgtaatgatgtc |
1508102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 4917707 - 4917547
Alignment:
| Q |
15 |
aatctgcatgtttttggactccatcagaaattcaatatcttcattctcgaatttcagcacaaaacccaatgtgatcaattcagatagggcaggaacaaaa |
114 |
Q |
| |
|
|||||||| || ||||| ||||| ||||| ||||| |||||||||| |||||||| | |||||| |||||| | |||| || ||||||||| | |
|
|
| T |
4917707 |
aatctgcagattcttggattccattagaaaatcaatttcttcattcttaaatttcagaaagaaacccgttgtgattagatcagtgagtgcaggaacatga |
4917608 |
T |
|
| Q |
115 |
tcatgattctcagacaaaataccttctgatattgtttcagaaaaatatgtcgcatatttca |
175 |
Q |
| |
|
|| ||||||||| ||||| ||| || ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4917607 |
tcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttca |
4917547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University