View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_high_83 (Length: 264)

Name: NF16077_high_83
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_high_83
NF16077_high_83
[»] chr8 (2 HSPs)
chr8 (1-259)||(38817795-38818053)
chr8 (61-119)||(39458787-39458845)
[»] chr2 (2 HSPs)
chr2 (18-94)||(12083323-12083400)
chr2 (222-259)||(12083229-12083266)
[»] chr1 (1 HSPs)
chr1 (18-94)||(39402676-39402749)
[»] chr5 (1 HSPs)
chr5 (18-96)||(20150795-20150870)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 38818053 - 38817795
Alignment:
Q  1 actaatggtaacaaccactcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataatattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38818053 actaatggtaacaaccactcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataatattcc 38817954  T
Q  101 cctgataaaggctaagcctagagccactttaaataaataatataagacatagaaaatgcaaggaaatgattaatttgaatctggctatcattcctctaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38817953 cctgataaaggctaagcctagagccactttaaataaataatataagacatagaaaatgcaaggaaatgattaatttgaatctggctatcattcctctaaa 38817854  T
Q  201 acgaaatgaatcttggctaaagccacggatcacgctcctcatgtctcattcttctcact 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38817853 acgaaatgaatcttggctaaagccacggatcacgctcctcatgtctcattcttctcact 38817795  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 39458845 - 39458787
Alignment:
Q  61 caacaaggaaatttcaaggtctagttcttcataatattcccctgataaaggctaagcct 119  Q
    ||||||| | |||||||||||||| |||||  |||| ||||||||||||||||| ||||    
T  39458845 caacaagcatatttcaaggtctagctcttcgcaataatcccctgataaaggctaggcct 39458787  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 12083400 - 12083323
Alignment:
Q  18 ctcaagaaattactacaaaagattcaaacaatgttcct-ttctccaacaaggaaatttcaaggtctagttcttcataa 94  Q
    ||||||||||||| |||||||||||||| |||||||||  ||| ||||||| | ||||||||||||||||||||||||    
T  12083400 ctcaagaaattacaacaaaagattcaaataatgttcctaatctacaacaagtatatttcaaggtctagttcttcataa 12083323  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 12083266 - 12083229
Alignment:
Q  222 gccacggatcacgctcctcatgtctcattcttctcact 259  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  12083266 gccacggatcacgctcctcaagtctcattcttcacact 12083229  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 39402676 - 39402749
Alignment:
Q  18 ctcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataa 94  Q
    ||||||||||||| || ||| ||||||||| | |||||||||   ||||||| ||||||||||  ||||||||||||    
T  39402676 ctcaagaaattacaacgaaatattcaaacagttttcctttct---acaaggacatttcaaggtgaagttcttcataa 39402749  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 20150870 - 20150795
Alignment:
Q  18 ctcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataata 96  Q
    ||||| || |||| |||||||||| |||||||||||   ||  ||||||||| ||||||||||||||||| || |||||    
T  20150870 ctcaaaaatttacaacaaaagattgaaacaatgttc---tcgacaacaaggatatttcaaggtctagttcgtcgtaata 20150795  T

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