View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_high_84 (Length: 264)

Name: NF16077_high_84
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_high_84
NF16077_high_84
[»] chr7 (7 HSPs)
chr7 (13-115)||(11668211-11668315)
chr7 (145-212)||(11668803-11668873)
chr7 (145-207)||(11668446-11668511)
chr7 (145-200)||(8648888-8648946)
chr7 (32-105)||(39616949-39617024)
chr7 (156-211)||(15090393-15090451)
chr7 (32-118)||(8648661-8648749)
[»] chr5 (6 HSPs)
chr5 (145-212)||(10731440-10731510)
chr5 (13-87)||(10731609-10731684)
chr5 (32-87)||(16364341-16364398)
chr5 (52-87)||(29384964-29384999)
chr5 (145-187)||(16364750-16364792)
chr5 (13-114)||(11991044-11991147)
[»] chr3 (5 HSPs)
chr3 (149-207)||(18194492-18194553)
chr3 (149-212)||(47257216-47257282)
chr3 (21-105)||(40243867-40243953)
chr3 (13-81)||(27080172-27080242)
chr3 (143-212)||(2063580-2063652)
[»] chr4 (4 HSPs)
chr4 (13-87)||(54851899-54851975)
chr4 (13-87)||(54854480-54854556)
chr4 (20-87)||(54852332-54852401)
chr4 (13-86)||(54853896-54853971)
[»] chr2 (2 HSPs)
chr2 (15-80)||(34323585-34323652)
chr2 (15-87)||(16642056-16642129)
[»] chr6 (1 HSPs)
chr6 (52-90)||(30122934-30122972)


Alignment Details
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 11668315 - 11668211
Alignment:
Q  13 agcaaaggacacaaaagattataattttgataacttgtc--aaaattaagaaggggtaagattgtatttttagtagatatcaaacttcataattatatga 110  Q
    |||||| ||||||||||  |||||||||||| || ||||  |||||||||||||||||||||||||||||| ||||| || ||  |||||||||| || |    
T  11668315 agcaaatgacacaaaaggatataattttgatgacgtgtctaaaaattaagaaggggtaagattgtatttttggtagacattaagtttcataattagataa 11668216  T
Q  111 tagat 115  Q
    |||||    
T  11668215 tagat 11668211  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 11668873 - 11668803
Alignment:
Q  145 attgttttgaactctttagatatttagaagttgaattataa---aatttgttttgattgagattaaaatta 212  Q
    |||||||| ||||||||| ||||||||||| ||||||||||   |||||||||||||||||||||||||||    
T  11668873 attgtttttaactctttaaatatttagaagatgaattataagaaaatttgttttgattgagattaaaatta 11668803  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 11668511 - 11668446
Alignment:
Q  145 attgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaa 207  Q
    |||||||| ||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  11668511 attgtttttaactctttagatatttaaaagttgaattataggaaaatttgttttgattgagattaa 11668446  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 8648946 - 8648888
Alignment:
Q  145 attgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattg 200  Q
    |||||||| ||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  8648946 attgttttaaactctttagataattagaagttgaattataggaaaatttgttttgattg 8648888  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 39617024 - 39616949
Alignment:
Q  32 tataattttgataacttgtcaaaa--ttaagaaggggtaagattgtatttttagtagatatcaaacttcataatta 105  Q
    |||||||||||| || ||||||||  |||||||||||||||| ||||||||| ||||| || ||| ||||||||||    
T  39617024 tataattttgatgacatgtcaaaaaattaagaaggggtaagactgtatttttggtagacattaaatttcataatta 39616949  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 15090393 - 15090451
Alignment:
Q  156 ctctttagatatttagaagttgaattata---aaatttgttttgattgagattaaaatt 211  Q
    ||||||||||||||||||||| || ||||   |||||||||||||||| ||||||||||    
T  15090393 ctctttagatatttagaagttaaaatatagaaaaatttgttttgattgggattaaaatt 15090451  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 8648749 - 8648661
Alignment:
Q  32 tataattttgataacttgtcaaaat--taagaaggggtaagattgtatttttagtagatatcaaacttcataattatatgatagataga 118  Q
    |||||||||||| || |||||||||  | ||||||| ||||||||||||||  ||| |||| ||  ||||||||||||  |||||||||    
T  8648749 tataattttgatgacgtgtcaaaatatttagaagggataagattgtattttcggtaaatattaagtttcataattatagaatagataga 8648661  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 10731440 - 10731510
Alignment:
Q  145 attgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaaaatta 212  Q
    |||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||| |||||| ||||    
T  10731440 attgtttttaactctttagatatttagaagttgaattataggaaaatttgttttgattgggattaagatta 10731510  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 10731609 - 10731684
Alignment:
Q  13 agcaaaggacacaaaagattataattttgataacttgtcaaaa--ttaagaaggggtaagattgtatttttagtaga 87  Q
    |||||| |||||||||||| ||||||||||| || ||||||||  |||||||| |||||||||||||||||| ||||    
T  10731609 agcaaaagacacaaaagat-ataattttgatgacgtgtcaaaaaattaagaagaggtaagattgtatttttaataga 10731684  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 16364398 - 16364341
Alignment:
Q  32 tataattttgataacttgtcaaaa--ttaagaaggggtaagattgtatttttagtaga 87  Q
    |||||||||||| || ||||||||  |||||||||||||||||||||||||| |||||    
T  16364398 tataattttgatgacgtgtcaaaaaattaagaaggggtaagattgtatttttggtaga 16364341  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 29384999 - 29384964
Alignment:
Q  52 aaaattaagaaggggtaagattgtatttttagtaga 87  Q
    |||||||||||||||||||||||||||||| |||||    
T  29384999 aaaattaagaaggggtaagattgtatttttggtaga 29384964  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 16364792 - 16364750
Alignment:
Q  145 attgttttgaactctttagatatttagaagttgaattataaaa 187  Q
    |||||||| |||||||||  |||||||||||||||||||||||    
T  16364792 attgtttttaactctttaactatttagaagttgaattataaaa 16364750  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 11991147 - 11991044
Alignment:
Q  13 agcaaaggacacaaaagattataattttgataacttgtcaaaa--ttaagaaggggtaagattgtatttttagtagatatcaaacttcataattatatga 110  Q
    |||||| ||||||||||  |||| |||| ||||  ||||||||  || ||||||||||||||| ||||||| ||||| || ||  || ||||||| ||||    
T  11991147 agcaaaagacacaaaaggatatattttttataatatgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattagatga 11991048  T
Q  111 taga 114  Q
    ||||    
T  11991047 taga 11991044  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 18194492 - 18194553
Alignment:
Q  149 ttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaa 207  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  18194492 tttttaactctttagatatttagaagttgaattatatgaaaatttgttttgattgagattaa 18194553  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 47257216 - 47257282
Alignment:
Q  149 ttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaaaatta 212  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||| || ||||||||||| ||||    
T  47257216 tttttaactctttagatatttagaagttgaattatcgaaaaatttgtattcattgagattaagatta 47257282  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 40243953 - 40243867
Alignment:
Q  21 acacaaaagattataattttgataacttgtcaaaa--ttaagaaggggtaagattgtatttttagtagatatcaaacttcataatta 105  Q
    |||||||||| |||||||||||| || ||||||||  |||| ||||||||||||| ||||||| ||||| || ||  ||||||||||    
T  40243953 acacaaaagaatataattttgatgacgtgtcaaaaaattaataaggggtaagattttatttttggtagaaattaagtttcataatta 40243867  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 27080242 - 27080172
Alignment:
Q  13 agcaaaggacacaaaagattataattttgataacttgtcaaaa--ttaagaaggggtaagattgtattttt 81  Q
    |||||| ||||||||||   ||||||||||| || ||||||||  |||||||||||||| |||||||||||    
T  27080242 agcaaaagacacaaaaggaaataattttgatgacgtgtcaaaagattaagaaggggtaatattgtattttt 27080172  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 2063652 - 2063580
Alignment:
Q  143 agattgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaaaatta 212  Q
    |||||||||| || |||||| ||||||||||||  ||||||   ||||||||||||||||  |||||||||||    
T  2063652 agattgtttttaaatctttacatatttagaagtgaaattatagaaaaatttgttttgattaggattaaaatta 2063580  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 54851899 - 54851975
Alignment:
Q  13 agcaaaggacacaaaagattataattttgataacttgtcaaaat--taagaaggggtaagattgtatttttagtaga 87  Q
    |||||| ||||||||||  |||||||||||| || |||||||||  ||||||||||||||||||||||||| |||||    
T  54851899 agcaaaagacacaaaaggatataattttgatgacgtgtcaaaatattaagaaggggtaagattgtatttttggtaga 54851975  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 54854480 - 54854556
Alignment:
Q  13 agcaaaggacacaaaagattataattttgataacttgtcaaaat--taagaaggggtaagattgtatttttagtaga 87  Q
    |||||| || |||||||  |||||||||||||||  ||||||||  ||||||||||||||||||||||||| |||||    
T  54854480 agcaaaagatacaaaaggatataattttgataacgcgtcaaaatactaagaaggggtaagattgtatttttggtaga 54854556  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 54852332 - 54852401
Alignment:
Q  20 gacacaaaagattataattttgataacttgtcaaaat--taagaaggggtaagattgtatttttagtaga 87  Q
    ||||||||||  ||||||||| || || |||||||||  ||||||||| ||||||||||||||| |||||    
T  54852332 gacacaaaaggatataattttaatgacgtgtcaaaatattaagaagggttaagattgtatttttggtaga 54852401  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 54853896 - 54853971
Alignment:
Q  13 agcaaaggacacaaaagattataattttgataacttgtcaaa--attaagaaggggtaagattgtatttttagtag 86  Q
    |||||| |||||||||   |||||||||||| || |||||||  ||||| ||||| ||||||||||||||| ||||    
T  54853896 agcaaaagacacaaaatgatataattttgatgacgtgtcaaaatattaaaaagggataagattgtattttttgtag 54853971  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 34323585 - 34323652
Alignment:
Q  15 caaaggacacaaaagattataattttgataacttgtcaaaa--ttaagaaggggtaagattgtatttt 80  Q
    |||| |||||||||   |||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  34323585 caaaagacacaaaaagatataattttgatgacttgtcaaaaaattaagaaggggtaagattgtatttt 34323652  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 16642056 - 16642129
Alignment:
Q  15 caaaggacacaaaagattataattttgataacttgtcaaaa--ttaagaaggggtaagattgtatttttagtaga 87  Q
    |||| ||| ||||||  |||||||||||||| |||||||||  |||||||||||||||||||||||||| |||||    
T  16642056 caaaagacgcaaaaggatataattttgataa-ttgtcaaaaaattaagaaggggtaagattgtatttttggtaga 16642129  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 30122972 - 30122934
Alignment:
Q  52 aaaattaagaaggggtaagattgtatttttagtagatat 90  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  30122972 aaaattaagaaggggtaagattatatttttggtagatat 30122934  T

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