View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_high_95 (Length: 249)
Name: NF16077_high_95
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_95 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 54688903 - 54688692
Alignment:
| Q |
16 |
cataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaaccnnnnnnnnnnnnnnnnnnnnt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54688903 |
cataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaaccaaagaaaaaaa---------t |
54688813 |
T |
|
| Q |
116 |
ggcagcctctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccatacccactcattcttaaatcgaatgaacattta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
54688812 |
ggcagcctctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccacacccactcattcttaaatgtaatgaacattta |
54688713 |
T |
|
| Q |
216 |
gacaccttattaagatcttcc |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
54688712 |
gacaccttattaagatcttcc |
54688692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 54700850 - 54700638
Alignment:
| Q |
16 |
cataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaaccnnnnnnnnnnnnnnnnnnnnt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54700850 |
cataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaaccaaaaaaaataaaataaaaa-t |
54700752 |
T |
|
| Q |
116 |
ggcagcctctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccatacccactcattcttaaatcgaatgaacattta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
54700751 |
ggcagcctctcctttgaactcaaaatccaatttccatggtcgctcaaacagcttgccatctagaccacacccactcatgcttaaatgcaatgaacatttg |
54700652 |
T |
|
| Q |
216 |
gacaccttattaag |
229 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
54700651 |
gacaccttgttaag |
54700638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 54693382 - 54693269
Alignment:
| Q |
123 |
tctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccatacccactcattcttaaatcgaatgaacatttagacacct |
222 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||||||| ||| ||||| || |||||| |||||||||||||| ||| ||| ||||||| ||||||| |
|
|
| T |
54693382 |
tctcctttgaatacaaaatcaaatttccatggtcgctcaaacagtttgccctctagaccacacccactcattcttcaatgcaatcaacatttggacacct |
54693283 |
T |
|
| Q |
223 |
tattaagatcttcc |
236 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
54693282 |
tactaaggtcttcc |
54693269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University