View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_high_98 (Length: 246)
Name: NF16077_high_98
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_high_98 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24623696 - 24623448
Alignment:
| Q |
1 |
tctaaccaaggatattgctattaaacttgcacatgattgtaatggcttcatacaggatctagaatagatattaatctaatttaatttaatgatattgcta |
100 |
Q |
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| T |
24623696 |
tctaactaatgatattgctattaaacttgcacatgattgtaatggcttcatacaggatctataatagaaattaatctaatttaatttaatgatattgcta |
24623597 |
T |
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| Q |
101 |
tagtaattagtctaagatattggtctgttcaactaaaacattattaaccgaaactgaaacattat-------taaccttgttaggttttagttgatcttt |
193 |
Q |
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| T |
24623596 |
tagtacttagtctaagatattggcctgttcaactaaaacattattaaccgaaactgaaacaatataaatagataaccttgttagtttttagctgatcttt |
24623497 |
T |
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| Q |
194 |
atgtcaagtcagtagcctgcttgagaaattttgcctcttgcctctgtta |
242 |
Q |
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| T |
24623496 |
atgtcaagtcagtagcctgcttgagaaattttgcctcttgactatgtta |
24623448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 46628235 - 46628160
Alignment:
| Q |
166 |
taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctctgtta |
242 |
Q |
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| T |
46628235 |
taaccttgttag-ttttaactgatctttatgtcaagtcagtagtctgcttgagaaatcttgcctcttgtctatgtta |
46628160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 9750028 - 9750143
Alignment:
| Q |
120 |
ttggtctgttcaactaaaacattattaaccgaaactgaaacattat---taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttg |
216 |
Q |
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| T |
9750028 |
ttggactgttccactagaacattattaactgaaaccgaaacaatataaataaccttgttagtttttaactgatctttttgtcaagtcagtagtctgcttg |
9750127 |
T |
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| Q |
217 |
agaaattttgcctctt |
232 |
Q |
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|||||| ||||||||| |
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| T |
9750128 |
agaaatcttgcctctt |
9750143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 9009215 - 9009374
Alignment:
| Q |
86 |
ttaatgatattgctatagtaattagtctaagatattggtctgttcaactaaaacattattaaccgaaactgaaacattat---taaccttgttaggtttt |
182 |
Q |
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|||||||||||| |||| |||||||||||||||| |||||| |||||||||||||| || |||||||||| ||| ||||||| |||| | || |
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| T |
9009215 |
ttaatgatattgttataaagcttagtctaagatattgcactgttccactaaaacattatttactacaactgaaacaatatgaataaccttcttagttctt |
9009314 |
T |
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| Q |
183 |
agttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctctgtta |
242 |
Q |
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| T |
9009315 |
aactgatcttaaagtcaagtcagtagtttgcttgagaaatcttgcctcttgtctatgtta |
9009374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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