View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_10 (Length: 590)
Name: NF16077_low_10
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 11 - 575
Target Start/End: Complemental strand, 47332563 - 47331997
Alignment:
| Q |
11 |
cagagaaggttaataggttacagtgagtaagcttaatataagtaagacacaagatgattcttttgaaaagtcaaagtttgacaatatggtcaaatgtgtc |
110 |
Q |
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| T |
47332563 |
cagagaaggttaataggttacagtgagtaagcttaatataagtaagacacaagatggttcttttcaaaagtcaaagtttgacaatatggtcaaatgtgtc |
47332464 |
T |
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| Q |
111 |
accttaataacaatattgttatggaacagacttggttgcttcctcgtgcaggcctacctacctaccccataataattttaactgaaaattaataaaatac |
210 |
Q |
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| T |
47332463 |
accttaataacaatattgttatggaacagacttggttgcttcctcgtgcaggcctacctacctaccccataataattttaactgaaaattcataaaatac |
47332364 |
T |
|
| Q |
211 |
tttctagtgtattacatcaacctatacatatatgtctaatgttattttaacccatcattattagcctccttaacctcttgcagacgtcgcaagatatact |
310 |
Q |
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| T |
47332363 |
tttctagtatattacatcaacctatacatatatgtctaatgttattttaacccatcattattagcctctttaacctcttgcagacgtcgcaagatatact |
47332264 |
T |
|
| Q |
311 |
aaggttttgatcttttgagtgagactaagtgggtagcagaaatcaaactttgaa--nnnnnnnnnncctagcgaaaaattacattaccaactcgtccaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
47332263 |
aaggttttgatcttttgagtgagactaagtgggtagcagaaatcaaactttgaatttttttgttttcctagccaaaaattacattacctactcgtccaaa |
47332164 |
T |
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| Q |
409 |
acacggaaatgataaaagtatggtcttaatttaaaacattatcataatttgaatttagttttgataacaccgtattcgctcctaatatttctacatgcat |
508 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47332163 |
acacggaattgataaaagtatggtcttaatttaaaacattatcataatttgaatttagttttgataacaccgtattcgctcctaatatttctatatgcat |
47332064 |
T |
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| Q |
509 |
ccttattgctagtatggatctcgcaatgggaatatgatatgttttaattcatgatctttgtaattgt |
575 |
Q |
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| T |
47332063 |
ccttattgctagtatggatctcgcaatggaaatatgatatgttttaattcatgatctttgtaattgt |
47331997 |
T |
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