View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_low_104 (Length: 245)
Name: NF16077_low_104
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_104 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 29142162 - 29142375
Alignment:
| Q |
18 |
aattcaactcctctgcaccattataacagcttaatttgcattggataataatgtaagatagaataagcaaaaacaataatgcagcttcatgattgttaaa |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29142162 |
aattcaactcctctgcaccatcataacagcttaatttgcattggataataatgtaagatagaataagcataaacaataatgcagcttcatgattgttaaa |
29142261 |
T |
|
| Q |
118 |
taatagcttatctatctgtggaggaggacaggtgggttcggagtcccgatgatgatggagcttttacctttaaataagcatactcgttgattgctaatga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
29142262 |
taatagcttatctatctgtggaggaggacaggtgggttcggagtcccgatgatgatggagattttacctttaaatcagcatactcgttgattgctaagaa |
29142361 |
T |
|
| Q |
218 |
gatgttgaatgaga |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29142362 |
gatgttgaatgaga |
29142375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 31059079 - 31058978
Alignment:
| Q |
17 |
caattcaactcctctgcaccattataacagcttaatttgcattggataataatgtaagatagaataagcaaaaacaataatgcagcttcatgattgttaa |
116 |
Q |
| |
|
|||||||||| | |||||||| |||| ||||| |||||| ||||||||||| || |||||||||||||| |||| | ||||| ||||||||||| ||| |
|
|
| T |
31059079 |
caattcaacttcattgcaccatcataaaagctttatttgctttggataataaagt-agatagaataagcataaactacaatgcgccttcatgattggtaa |
31058981 |
T |
|
| Q |
117 |
ata |
119 |
Q |
| |
|
||| |
|
|
| T |
31058980 |
ata |
31058978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 9605506 - 9605409
Alignment:
| Q |
24 |
actcctctgcaccattataacagcttaatttgcattggataataatgtaagatagaataagcaaaaacaataatgcagcttcatgattgttaaataat |
121 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| ||||| | | ||| |||||| | |||| ||||||||||||||| |
|
|
| T |
9605506 |
actccactgcaccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataatgaaccttcttgattgttaaataat |
9605409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 55781514 - 55781412
Alignment:
| Q |
17 |
caattcaactcctctgcaccattataacagcttaatttgcattggataataatgtaagatagaataagcaaaaacaataatgcagcttcatgattgttaa |
116 |
Q |
| |
|
|||||||||| | |||||||| || | ||||| | |||| ||||||||||| ||| ||| ||||||||| |||| | |||||| ||||||||||| ||| |
|
|
| T |
55781514 |
caattcaacttcattgcaccatcatgaaagctttacttgctttggataataaagtatgattgaataagcataaactacaatgcaccttcatgattggtaa |
55781415 |
T |
|
| Q |
117 |
ata |
119 |
Q |
| |
|
||| |
|
|
| T |
55781414 |
ata |
55781412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 55845694 - 55845592
Alignment:
| Q |
17 |
caattcaactcctctgcaccattataacagcttaatttgcattggataataatgtaagatagaataagcaaaaacaataatgcagcttcatgattgttaa |
116 |
Q |
| |
|
|||||||||| | |||||||| || | ||||| | |||| ||||||||||| ||| ||| ||||||||| |||| | |||||| ||||||||||| ||| |
|
|
| T |
55845694 |
caattcaacttcattgcaccatcatgaaagctttacttgctttggataataaagtatgattgaataagcataaactacaatgcaccttcatgattggtaa |
55845595 |
T |
|
| Q |
117 |
ata |
119 |
Q |
| |
|
||| |
|
|
| T |
55845594 |
ata |
55845592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 8510666 - 8510599
Alignment:
| Q |
48 |
ttaatttgcattggataataatgtaagatagaataagcaaaaacaataatgcagcttcatgattgtta |
115 |
Q |
| |
|
||||||| || |||||||||| ||||||||||||||| |||| | |||||| |||||||||||||| |
|
|
| T |
8510666 |
ttaatttccactggataataaaaaaagatagaataagcataaactaaaatgcaccttcatgattgtta |
8510599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 39095 - 39155
Alignment:
| Q |
61 |
gataataatgtaagatagaataagcaaaaacaataatgcagcttcatgattgttaaataat |
121 |
Q |
| |
|
|||||||| |||||||||||||| || | || |||||||| ||| ||||||||||||||| |
|
|
| T |
39095 |
gataataaagtaagatagaataaacatatactataatgcacctttgtgattgttaaataat |
39155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University