View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_110 (Length: 235)
Name: NF16077_low_110
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_110 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 341301 - 341505
Alignment:
| Q |
13 |
gagaagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatg |
112 |
Q |
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| T |
341301 |
gagaagaaaatgactgaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatg |
341400 |
T |
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| Q |
113 |
aaatcaatgctgaaagtgatgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtga |
212 |
Q |
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| T |
341401 |
aaatcaatgctgaaagtgatgatgctcatcatgttgatatgttaacggcattgattagagaagaaaaaaacaagggtagtgaaagtgaagcacttggtga |
341500 |
T |
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| Q |
213 |
caagt |
217 |
Q |
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||||| |
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| T |
341501 |
caagt |
341505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 333009 - 333171
Alignment:
| Q |
13 |
gagaagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatg |
112 |
Q |
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||||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
333009 |
gagaaaaaaatgaccgaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatg |
333108 |
T |
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| Q |
113 |
aaatcaatgctgaaagtgatgatgctcatcatgttgatatgctaacggcgttgattagagaag |
175 |
Q |
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| T |
333109 |
aaatcaatgttgaaagtgacgatgctcatcatgttgatttgcttacgacgttgattagagaag |
333171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 337263 - 337467
Alignment:
| Q |
13 |
gagaagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatg |
112 |
Q |
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||||| |||||||| || |||||||| ||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
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| T |
337263 |
gagaaaaaaatgactgaagcatgcaaagtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatg |
337362 |
T |
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| Q |
113 |
aaatcaatgctgaaagtgatgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtga |
212 |
Q |
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|||| |||| | ||||| |||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||||||| || ||||| | |
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| T |
337363 |
aaattaatggtcaaagtaatgatgctcatcatgttgatttgctaacggcattaattagagaagaaaatagcaagggtagtgaaagtgaatcaattggtaa |
337462 |
T |
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| Q |
213 |
caagt |
217 |
Q |
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||||| |
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| T |
337463 |
caagt |
337467 |
T |
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