View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_114 (Length: 228)

Name: NF16077_low_114
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_114
NF16077_low_114
[»] chr6 (9 HSPs)
chr6 (1-211)||(4376177-4376387)
chr6 (13-207)||(4383763-4383957)
chr6 (1-211)||(4388872-4389074)
chr6 (13-115)||(4359254-4359357)
chr6 (13-115)||(4415555-4415658)
chr6 (13-144)||(4369031-4369163)
chr6 (47-135)||(5726528-5726616)
chr6 (82-144)||(4364701-4364763)
chr6 (48-108)||(10111245-10111305)
[»] chr8 (1 HSPs)
chr8 (3-189)||(3595802-3595984)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4376177 - 4376387
Alignment:
Q  1 agtaagtgctatgtattttacaattcacattcaatatttttctcatcttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4376177 agtaagtgctatgtattttacaattcacattcaatatttttctcatcttaccatctcaaatgcactccgattatgatcacccccataagaactgcatgtc 4376276  T
Q  101 aagcttaatacacgacatgcaaatttttggagctccggtagtccctctccaaaggcgctccaccaaactgatggaacctcattaccagctgtcgttacgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4376277 aagcttaatacacgacatgcaaatttttggagctccggtagtccctctccaaaggcgctccaccaaactgatggaacctcattaccagctgtcgttacgg 4376376  T
Q  201 ctacaggatga 211  Q
    |||||||||||    
T  4376377 ctacaggatga 4376387  T

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Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 4383763 - 4383957
Alignment:
Q  13 gtattttacaattcacattcaatatttttctcatcttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtcaagcttaataca 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4383763 gtattttacaattcacattcaatatttttttcatcttaccatctcgaaggcactccgattacgctcacccccataagaactgcatgtcaagcttaataca 4383862  T
Q  113 cgacatgcaaatttttggagctccggtagtccctctccaaaggcgctccaccaaactgatggaacctcattaccagctgtcgttacggctacagg 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| ||| |||| ||||    
T  4383863 cgacacgcaaatttttggagctccggtagtccctctccaaaggctctccaccaaactgatggaatctcaatacgagctgtccttatggcttcagg 4383957  T

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Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4388872 - 4389074
Alignment:
Q  1 agtaagtgctatgtattttacaattcacattcaatatttttctcatcttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtc 100  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  4388872 agtaagtgctaggtattttacaattgacattcaatatttttttcatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtc 4388971  T
Q  101 aagcttaatacacgacatgcaaatttttggagctccggtagtccctctccaaaggcgctccaccaaactgatggaacctcattaccagctgtcgttacgg 200  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||        |||||||||||||||||||||| ||| ||||||    
T  4388972 aagcttaatacacgacacgcaaatttttggagctctggtagtccctttccgaaggcgct--------ctgatggaacctcattaccagccgtcattacgg 4389063  T
Q  201 ctacaggatga 211  Q
    |||||||||||    
T  4389064 ctacaggatga 4389074  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4359254 - 4359357
Alignment:
Q  13 gtattttacaattcacattcaatatt-tttctcatcttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtcaagcttaatac 111  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| || ||  |||||||| | ||||||||||||||||||| |||||||| ||||||    
T  4359254 gtattttacaattcatattcaatattctttatcatcttaccatctcgaaggccttccgattatgctcacccccataagaactgcctgtcaagcataatac 4359353  T
Q  112 acga 115  Q
    ||||    
T  4359354 acga 4359357  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 4415658 - 4415555
Alignment:
Q  13 gtattttacaattcacattcaatatttttc-tcatcttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtcaagcttaatac 111  Q
    ||||||||||||||| ||||||| |||||  |||||||||||||||  | |||||| ||||| | ||||||||||||||||| ||||||||||| ||||     
T  4415658 gtattttacaattcatattcaatgttttttatcatcttaccatctcgtaggcactctgattatgctcacccccataagaactacatgtcaagctcaatat 4415559  T
Q  112 acga 115  Q
    ||||    
T  4415558 acga 4415555  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 4369031 - 4369163
Alignment:
Q  13 gtattttacaattcacattcaata-tttttctcatcttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtcaagcttaatac 111  Q
    ||||||||||||||| ||| |||| ||||| ||||||||||||||| || |||  | ||  | |   ||| |||||| ||||||||||||||||||||||    
T  4369031 gtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatac 4369130  T
Q  112 acgacatgcaaatttttggagctccggtagtcc 144  Q
    ||||  |||||||||||||||||| ||| ||||    
T  4369131 acgaattgcaaatttttggagctctggtggtcc 4369163  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 5726616 - 5726528
Alignment:
Q  47 cttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtcaagcttaatacacgacatgcaaatttttggagctc 135  Q
    ||||||||||| || |||||   |||||| |||||||||||||||||||||| ||||| ||||||||||  ||||||||| ||||||||    
T  5726616 cttaccatctcgaaggcacttttattacgctcacccccataagaactgcatgccaagcataatacacgaattgcaaatttctggagctc 5726528  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 4364701 - 4364763
Alignment:
Q  82 cccataagaactgcatgtcaagcttaatacacgacatgcaaatttttggagctccggtagtcc 144  Q
    |||||||||||||| ||||||||||||||||||   ||||||||| || ||||| ||| ||||    
T  4364701 cccataagaactgcttgtcaagcttaatacacggattgcaaatttctgtagctctggtggtcc 4364763  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 10111245 - 10111305
Alignment:
Q  48 ttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtcaagcttaa 108  Q
    ||||||| ||||||||||||| |||||| ||||  ||| |||| || ||||||||||||||    
T  10111245 ttaccatttcaaatgcactccaattacgttcacatccagaagagctacatgtcaagcttaa 10111305  T

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Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 3595984 - 3595802
Alignment:
Q  3 taagtgctatgtattttacaattcacattcaatatttttctcatcttaccatctcaaatgcactccgattacgatcacccccataagaactgcatgtcaa 102  Q
    ||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||| ||||||  ||||||||||||||||| ||||||||    
T  3595984 taagtactatgtattttacaattcacattcaatttttttc--atcttaccatctcaaaggcactctgattactctcacccccataagaacttcatgtcaa 3595887  T
Q  103 gcttaatacacgacatgcaaatttttggagctccggtagtccctctccaaaggcgctccaccaaactgatggaacctcattaccagc 189  Q
    |||||||||||||||  |||||||||||||||| |||||||||| ||||||||  |||||||||||||||||||| |||||||||||    
T  3595886 gcttaatacacgaca--caaatttttggagctctggtagtccctttccaaagggactccaccaaactgatggaacttcattaccagc 3595802  T

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