View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_12 (Length: 560)
Name: NF16077_low_12
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 37403291 - 37403760
Alignment:
| Q |
16 |
aagaatgtatattccattaacacataaattactacattaaaaaggttaaactaggctacaagaaaattgaaccaacatagtttatttttgtcaaaccggc |
115 |
Q |
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| T |
37403291 |
aagaatgtatattccattaacacataaattactacattaaaaaggttaaactaggctacaagaaaattgaaccaacatagtttatttttgtcaaaccggc |
37403390 |
T |
|
| Q |
116 |
tgatcgtctacgacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggcggctagcgtggggtgaatattttcaatgc |
215 |
Q |
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| T |
37403391 |
tgatcgtctacaacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggctgctagcgtggggtgaatattttcaatgc |
37403490 |
T |
|
| Q |
216 |
ctgagggatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagatagagcaaacatgtaattttgctccatgatcatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37403491 |
ctgagggatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagatagagcaaacatgtaattttgctccatgatcatg |
37403590 |
T |
|
| Q |
316 |
attatgacccaacttatcaagcttttttttgggagtacatagcnnnnnnnnnncttctacttttttctcttatggttgttttaaaccgaaccaaaccgtt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37403591 |
attatgacccaacttatcaagcttttttttgggagtacatagctttttttttccttctacttttttctcttatggttgttttaaaccgaaccaaaccgtt |
37403690 |
T |
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| Q |
416 |
ataatacacaatttttgtgaaccgaaccatttgtttttgtgaaccgaactgttaaccttttctgaattac |
485 |
Q |
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| T |
37403691 |
ataatacacaatttttgtgaaccgaaccatttgtttttgtgaaccaaactgttaaccttttctgaattac |
37403760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 22 - 336
Target Start/End: Original strand, 38240150 - 38240468
Alignment:
| Q |
22 |
gtatattccattaacacataaattactacattaaaaaggttaaactaggctacaagaaaattgaaccaacatagtttatttttgtcaaaccggctgatcg |
121 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||| |||||||| |
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| T |
38240150 |
gtatattccattaacacacaaattaccacattaaaaaggttaaactaggctactagaaaattgagccaatcaagtttattattgtcaaacaggctgatca |
38240249 |
T |
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| Q |
122 |
tctacgacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggcggctagcgtggggtgaatattttcaatgcctgagg |
221 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||| ||| || | ||||||||| |||||| |||| ||| |
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| T |
38240250 |
tcttcgacaggaaacgttgcaacagatgtctcgaatacttaccgtacgtcaaactgctcgatggctgcttgctttgggtgaatactttcaacgcctaagg |
38240349 |
T |
|
| Q |
222 |
gatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagat---agagcaaacatgtaatttt-gctccatgatcatgat |
317 |
Q |
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||||||| |||||||||||||| | |||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
38240350 |
gatttgagcaaactttggaccaatcgtcctcgtgaacctgcatagtcttcatgcaagagatagaagagcaaacctgtaattttagctccatgatcatgat |
38240449 |
T |
|
| Q |
318 |
tatgacccaacttatcaag |
336 |
Q |
| |
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||| |||||||||||||| |
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| T |
38240450 |
tatagcccaacttatcaag |
38240468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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