View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_120 (Length: 216)
Name: NF16077_low_120
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_120 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 29993 - 29806
Alignment:
| Q |
19 |
gtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29993 |
gtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatga |
29894 |
T |
|
| Q |
119 |
tgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttgctact |
206 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
29893 |
tgatggtcatgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtgatttcctttgatact |
29806 |
T |
|
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Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 26397708 - 26397521
Alignment:
| Q |
19 |
gtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatga |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26397708 |
gtttgaatttagaatcaggagatgcaaaggcaatgctgtagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatga |
26397609 |
T |
|
| Q |
119 |
tgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttgctact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
26397608 |
tgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtgatttcctttgatact |
26397521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 25830235 - 25830088
Alignment:
| Q |
49 |
caatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtcgtgtaaaaaatgtattttgggt |
148 |
Q |
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||||| |||||| |||||||| |||||||||||||||| | ||||| ||||||||| |||||||||||||||| | |||||||| |||||| |||||| | |
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| T |
25830235 |
caatgttggagtgttttatgcttatgcaagaagaaaatcctagatttttttatgcaattgatttggatgatgaagatcgtgtaagaaatgtgttttggat |
25830136 |
T |
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| Q |
149 |
ggatggaaagggtagagatgattataaagtgtttggagatgtaatttc |
196 |
Q |
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||||| ||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
25830135 |
ggatgcaaaaggtagagatgattataaagaatttggagatgtgatttc |
25830088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 26459999 - 26460173
Alignment:
| Q |
19 |
gtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttg---ga |
115 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||| | || || || ||||||| || ||||| |||||||||||||||| | |||||| || |
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| T |
26459999 |
gtttgactttggaatcaggagatgcaaatgcaatgttggaatgttgtacgcttatgcaaaaacaaaatccaagattcttttatgcgatggatttggatga |
26460098 |
T |
|
| Q |
116 |
tgatgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgt |
190 |
Q |
| |
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||||||||||||| | ||||||||||||||| |||||| ||| |||| ||||||||| |||| |||||||||||| |
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| T |
26460099 |
tgatgatggtcgtctgaaaaatgtattttggatggatgcaaatggtatagatgattacaaagagtttggagatgt |
26460173 |
T |
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Target: scaffold0006 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 277103 - 276916
Alignment:
| Q |
19 |
gtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatga |
118 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277103 |
gtttgaatttagaatcaggagatgcaaaggcaatgctgaagtattttatacgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatga |
277004 |
T |
|
| Q |
119 |
tgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttgctact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
277003 |
tgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtgatttcctttgatact |
276916 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 20646451 - 20646280
Alignment:
| Q |
19 |
gtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatga |
118 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||| ||||| || |||||||||| |||||||||||||||||||||| | ||||||||||| |
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| T |
20646451 |
gtttgactttggaatcaggagatgcaaatgcaatgttggagtgttttacgcttatgcaagaaaaaaattcaagattcttttatgcgatggatttggatga |
20646352 |
T |
|
| Q |
119 |
tgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgt |
190 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||| |||| ||||||||| |||| |||||||||||| |
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| T |
20646351 |
tgatggtcgtctgaaaaatgtattttgggtggatgcaaatggtatagatgattacaaagagtttggagatgt |
20646280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 56108344 - 56108524
Alignment:
| Q |
26 |
tttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggt |
125 |
Q |
| |
|
||||||||| |||||||||||||||||| | || | |||||||| ||||||||||||| | || |||||||||||||| ||||| |||||||||| ||| |
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| T |
56108344 |
tttagaatctggagatgcaaatgcaatgttagattgttttatgctcatgcaagaagaaagtccaggattcttttatgcaattgatatggatgatgagggt |
56108443 |
T |
|
| Q |
126 |
cgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttgctact |
206 |
Q |
| |
|
|| | |||||||||||||||||||||| ||| |||||||| || ||| ||| |||||||||||| ||||| |||| |||| |
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| T |
56108444 |
cgcatgaaaaatgtattttgggtggatgcaaaaggtagagaagactatcaagagtttggagatgtgatttcatttgatact |
56108524 |
T |
|
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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 26014111 - 26014291
Alignment:
| Q |
26 |
tttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggt |
125 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| | |||||||| ||||||||||||| | || |||||||||||||| ||||| |||||||||| ||| |
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| T |
26014111 |
tttagaatctggagatgcaaatgcaatgttggattgttttatgctcatgcaagaagaaagtccaggattcttttatgcaattgatatggatgatgagggt |
26014210 |
T |
|
| Q |
126 |
cgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttgctact |
206 |
Q |
| |
|
|| | |||||||||||||||||||||| ||| |||||||| || ||| ||| |||||||||||| ||||| |||| |||| |
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|
| T |
26014211 |
cgcatgaaaaatgtattttgggtggatgcaaaaggtagagaagactatcaagagtttggagatgtgatttcatttgatact |
26014291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 6965615 - 6965796
Alignment:
| Q |
26 |
tttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| || |||||||||||||| ||||| |||||||||| ||| |
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| T |
6965615 |
tttagaatcaggagatgcaaatgcaatgttggattgttttatgctcatgcaagaagaaaatccaggattcttttatgcaattgatatggatgatgagggt |
6965714 |
T |
|
| Q |
126 |
cgtgtaaaaaatgtattttgggt-ggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttgctact |
206 |
Q |
| |
|
|| | ||||||||||||||||| | ||| ||| |||||||| | ||| ||| |||||||||||| ||||| |||| |||| |
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|
| T |
6965715 |
cgcatgaaaaatgtattttgggtcgcatgcaaaaggtagagaacactatcaagagtttggagatgtgatttcatttgatact |
6965796 |
T |
|
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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 33002332 - 33002500
Alignment:
| Q |
27 |
ttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtc |
126 |
Q |
| |
|
||||| || |||||||||| ||||| |||||| |||||||| |||||||||||||||| | ||||| ||||||||| |||||||||||||||| | || |
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| T |
33002332 |
ttagagtcgggagatgcaacaacaatgttggagtgttttatgcttatgcaagaagaaaatcctagatt-ttttatgcaattgatttggatgatgaagatc |
33002430 |
T |
|
| Q |
127 |
gtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttc |
196 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||| ||||||||||||||| ||| ||||||||||| ||||| |
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|
| T |
33002431 |
gtgtaagaaacgtattttgggtggatgcaaaaggtagagatgattatcaagaatttggagatgtgatttc |
33002500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 845599 - 845527
Alignment:
| Q |
31 |
aatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgc |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| || |||||||||| |||||||||||||||||||||| |
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|
| T |
845599 |
aatcaggagatgcaaatgcaatgttggagtgttttacgcttatgcaagaacaaaattcaagattcttttatgc |
845527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 30400189 - 30400363
Alignment:
| Q |
26 |
tttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggt |
125 |
Q |
| |
|
|||||| || ||||| |||| ||||||| |||||| ||| |||| |||||||||| ||||| ||||| |||| || ||||||| |||||||| | | |
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| T |
30400189 |
tttagagtcgggagacgcaactgcaatgttggagtgttt-atgcttatgcaagaataaaatcttagatttttttgtgtgattgatttagatgatgaggat |
30400287 |
T |
|
| Q |
126 |
cgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttg |
201 |
Q |
| |
|
||||||| |||||||||||| || |||| ||| ||||||||||| ||| ||| |||||| |||| ||||| |||| |
|
|
| T |
30400288 |
cgtgtaagaaatgtattttgagtagatgtaaaaggtagagatgaatatcaagagtttgggaatgtgatttcgtttg |
30400363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 30406746 - 30406920
Alignment:
| Q |
26 |
tttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggt |
125 |
Q |
| |
|
|||||| || ||||| |||| ||||||| |||||| ||| |||| |||||||||| ||||| ||||| |||| || ||||||| |||||||| | | |
|
|
| T |
30406746 |
tttagagtcgggagacgcaactgcaatgttggagtgttt-atgcttatgcaagaataaaatcttagatttttttgtgtgattgatttagatgatgaggat |
30406844 |
T |
|
| Q |
126 |
cgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtaatttcctttg |
201 |
Q |
| |
|
||||||| |||||||||||| || |||| ||| ||||||||||| ||| ||| |||||| |||| ||||| |||| |
|
|
| T |
30406845 |
cgtgtaagaaatgtattttgagtagatgtaaaaggtagagatgaatatcaagagtttgggaatgtgatttcgtttg |
30406920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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