View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_128 (Length: 201)
Name: NF16077_low_128
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_128 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 37960305 - 37960475
Alignment:
| Q |
15 |
agatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccag |
114 |
Q |
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| T |
37960305 |
agatgaacagcatcagatttcttaggcttcccccacccaaaatctgtctcataaacagccaatttcggtgaaccagcaaccacagttacagacttaccag |
37960404 |
T |
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| Q |
115 |
gttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtctt |
185 |
Q |
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| T |
37960405 |
gttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactctttaaatgtctt |
37960475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 37954496 - 37954613
Alignment:
| Q |
15 |
agatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccag |
114 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| | | ||||||||||| |
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| T |
37954496 |
agatgaactgcatcagatttcttaggcttcccccatccaaaatctgtctcataaacagccaaattcggtgaaccagcaatcacattaacagacttaccag |
37954595 |
T |
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| Q |
115 |
gttttgacatttccctat |
132 |
Q |
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| T |
37954596 |
gttttgacatttccctat |
37954613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 37907731 - 37907567
Alignment:
| Q |
21 |
actgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttg |
120 |
Q |
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| T |
37907731 |
actgcatcagatttctttggttttccccacccaaaatcagtctcacaaacatcaagtttaggtgacccagcaaccactacaaatgagttaccaggtttta |
37907632 |
T |
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| Q |
121 |
acatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtctt |
185 |
Q |
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| T |
37907631 |
ataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcactcttaaaatctctt |
37907567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 37915880 - 37915720
Alignment:
| Q |
25 |
catcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacat |
124 |
Q |
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|||| |||||||| || || |||||||||||||| || ||||||||| | | ||| || || |||| ||||| | | ||| ||||| |||||| || |
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| T |
37915880 |
catcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattat |
37915781 |
T |
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| Q |
125 |
ttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtctt |
185 |
Q |
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| T |
37915780 |
ttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctctt |
37915720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 3784035 - 3783957
Alignment:
| Q |
15 |
agatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaa |
93 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || || || ||||||||| | ||||| ||||| ||||||| |
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| T |
3784035 |
agatgaactgcatcagattttttaggcttcccccacccgaagtcagtctcataaacatcaaatttaggtgagccagcaa |
3783957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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