View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_14 (Length: 548)
Name: NF16077_low_14
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 3623839 - 3624362
Alignment:
| Q |
1 |
cacacctcatgcaagatcaaagaaaaccacaaattttattaaatatttataataaaatttacatataacctatcaacgacataattccatattagaaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3623839 |
cacacctcatgcaagatcaaagaaaaccacaaattttattaaatatttataataaaatttacgtataacctatcaacgacataattccatattagaaccg |
3623938 |
T |
|
| Q |
101 |
aaatcacaactagtgtgagtagagtgagcagaagacgtaaccatttgtatcgaccacaatcgataataatggaccccactacttctagatatttcttttg |
200 |
Q |
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||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3623939 |
aaatcacaactagtgtgag---------cacaagatgtaaccatctgtatcgaccacaatcgataataatggaccccactacttctagatatttcttttg |
3624029 |
T |
|
| Q |
201 |
gatcacctgccttgtcagctatacctcgtcaaaaagataaatggtgtggcttaacatttgagagcttttattgggtcacacaatctcctccnnnnnnntg |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3624030 |
gaacacctgccttgtcagctatacctcgtcaaaaagataaatggtgtggcttaacatttgagagcttttattgggtcacacaatctcctccaaaaaaatg |
3624129 |
T |
|
| Q |
301 |
tgctcagaaaacaacaaactagaaaacagactatgaaattgacatgttaacatgaatcatatcaacaaatgtgacattttcattttgttctagaatttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3624130 |
tgctcagaaaacaacaaactagaaaacagactatgaaattgacatgttaacatgaatcatatcaacaaatgtgacattttcattttgttctagaatttcg |
3624229 |
T |
|
| Q |
401 |
aattctagtgtttaattctaaatactggcttaaaggctatagtttggcattattagccatagcttttgattattccataaacaagagttaacaagcaacc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3624230 |
aattctagtgtttaattctaaatactggcttaaaggctatagtttggcattattagccatagcttttgattattccataaacaagagttaacaagcaacc |
3624329 |
T |
|
| Q |
501 |
tcatgattgagaatacttgccacttagcctatg |
533 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3624330 |
tcatgattgagaatacttgccacttagcctatg |
3624362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 30868255 - 30868192
Alignment:
| Q |
6 |
ctcatgcaagatcaaagaaaaccacaaattttattaaatatttataataaaatttacatataac |
69 |
Q |
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|||||| ||||||| ||| ||||| |||||||||||| ||||| |||||||||||| |||||| |
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| T |
30868255 |
ctcatgtaagatcagagagaaccatcaattttattaaagatttacaataaaatttacgtataac |
30868192 |
T |
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