View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_15 (Length: 547)

Name: NF16077_low_15
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_15
NF16077_low_15
[»] chr5 (13 HSPs)
chr5 (333-534)||(41340234-41340434)
chr5 (284-499)||(41341446-41341669)
chr5 (18-175)||(41341894-41342050)
chr5 (323-497)||(5963675-5963849)
chr5 (175-286)||(41341697-41341810)
chr5 (333-497)||(34103546-34103710)
chr5 (386-497)||(14168926-14169037)
chr5 (377-491)||(13112535-13112649)
chr5 (377-491)||(13042537-13042651)
chr5 (446-497)||(3294931-3294982)
chr5 (425-491)||(13042710-13042776)
chr5 (425-491)||(13112708-13112774)
chr5 (377-418)||(6500893-6500934)
[»] chr6 (17 HSPs)
chr6 (317-499)||(22605241-22605423)
chr6 (371-497)||(21130097-21130223)
chr6 (336-484)||(22605025-22605173)
chr6 (27-175)||(2366594-2366741)
chr6 (19-175)||(2361987-2362142)
chr6 (66-165)||(2356308-2356406)
chr6 (26-164)||(2349664-2349801)
chr6 (318-491)||(7301569-7301744)
chr6 (324-399)||(9362847-9362922)
chr6 (377-491)||(11637767-11637881)
chr6 (449-491)||(21297251-21297293)
chr6 (27-128)||(2338656-2338757)
chr6 (446-487)||(7301415-7301456)
chr6 (175-281)||(2361795-2361903)
chr6 (175-279)||(2366401-2366507)
chr6 (460-491)||(6250082-6250113)
chr6 (332-375)||(21118923-21118966)
[»] chr7 (12 HSPs)
chr7 (326-497)||(48071378-48071549)
chr7 (335-494)||(8802199-8802358)
chr7 (317-497)||(27391755-27391934)
chr7 (335-497)||(8802485-8802654)
chr7 (423-489)||(11776439-11776505)
chr7 (377-491)||(21416187-21416301)
chr7 (446-489)||(11776179-11776222)
chr7 (377-418)||(9901714-9901755)
chr7 (377-434)||(34218080-34218137)
chr7 (452-489)||(45100184-45100221)
chr7 (375-423)||(1085292-1085340)
chr7 (423-491)||(2463443-2463511)
[»] chr3 (22 HSPs)
chr3 (321-497)||(17731894-17732070)
chr3 (321-497)||(19033125-19033301)
chr3 (360-497)||(16870988-16871125)
chr3 (377-497)||(54017594-54017714)
chr3 (46-171)||(4303756-4303880)
chr3 (321-480)||(23161913-23162072)
chr3 (363-461)||(17735023-17735121)
chr3 (363-461)||(19036292-19036390)
chr3 (392-491)||(43978636-43978735)
chr3 (333-428)||(16869799-16869894)
chr3 (413-487)||(23162187-23162261)
chr3 (424-497)||(40195913-40195986)
chr3 (342-418)||(16868394-16868470)
chr3 (446-489)||(43481588-43481631)
chr3 (446-497)||(43978984-43979035)
chr3 (433-495)||(16869614-16869676)
chr3 (377-491)||(48127861-48127975)
chr3 (415-499)||(23161830-23161913)
chr3 (449-491)||(23162467-23162509)
chr3 (446-483)||(53981541-53981578)
chr3 (377-421)||(37990685-37990729)
chr3 (335-375)||(40196115-40196155)
[»] chr4 (15 HSPs)
chr4 (336-495)||(1868045-1868204)
chr4 (374-489)||(51681538-51681653)
chr4 (22-134)||(5805532-5805644)
chr4 (377-488)||(11197227-11197338)
chr4 (379-491)||(10396414-10396526)
chr4 (319-385)||(16559390-16559456)
chr4 (446-491)||(10396129-10396174)
chr4 (375-418)||(44621073-44621116)
chr4 (333-487)||(47680623-47680778)
chr4 (446-497)||(47681151-47681202)
chr4 (448-497)||(16559299-16559348)
chr4 (341-489)||(26473611-26473758)
chr4 (423-491)||(11307382-11307450)
chr4 (377-421)||(34646693-34646737)
chr4 (377-413)||(45496881-45496917)
[»] chr8 (14 HSPs)
chr8 (364-497)||(12156691-12156824)
chr8 (335-492)||(5981737-5981894)
chr8 (341-491)||(5981451-5981602)
chr8 (366-491)||(14028323-14028448)
chr8 (448-489)||(2954342-2954383)
chr8 (448-489)||(2954625-2954666)
chr8 (451-497)||(11576036-11576082)
chr8 (318-385)||(2954494-2954562)
chr8 (375-418)||(6876906-6876949)
chr8 (452-481)||(3671262-3671291)
chr8 (423-476)||(4840531-4840584)
chr8 (446-487)||(29103329-29103370)
chr8 (377-421)||(3669755-3669799)
chr8 (377-421)||(34834944-34834988)
[»] scaffold0014 (1 HSPs)
scaffold0014 (338-493)||(197725-197878)
[»] chr1 (15 HSPs)
chr1 (337-487)||(27686529-27686680)
chr1 (423-497)||(25294879-25294953)
chr1 (336-497)||(4392197-4392358)
chr1 (392-497)||(15327848-15327953)
chr1 (335-403)||(25293589-25293657)
chr1 (318-487)||(26231641-26231809)
chr1 (446-497)||(4392025-4392076)
chr1 (392-489)||(5821726-5821821)
chr1 (460-497)||(25294960-25294997)
chr1 (446-491)||(31973450-31973495)
chr1 (448-491)||(12466281-12466324)
chr1 (377-423)||(24600360-24600406)
chr1 (377-411)||(39066246-39066280)
chr1 (377-418)||(32594762-32594803)
chr1 (446-491)||(34665924-34665969)
[»] chr2 (5 HSPs)
chr2 (381-491)||(13792544-13792654)
chr2 (377-491)||(28226335-28226449)
chr2 (446-491)||(30219996-30220041)
chr2 (424-491)||(35448708-35448775)
chr2 (377-413)||(15689445-15689481)
[»] scaffold0256 (1 HSPs)
scaffold0256 (446-491)||(13367-13412)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 6e-91; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 333 - 534
Target Start/End: Complemental strand, 41340434 - 41340234
Alignment:
Q  333 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctta 432  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  41340434 gggagcggcaatgggc-aaacgtccaagaccataagagacttaaacaccacactcttatccaaaatcttaaggcaatgagtgtatgagttccctctctta 41340336  T
Q  433 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaatagctatgacttaagatctcgaagtttgcaatctt 532  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41340335 tatatcttttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaatagctatgacttaggatctcgaagtttgcaatctt 41340236  T
Q  533 tc 534  Q
    ||    
T  41340235 tc 41340234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 284 - 499
Target Start/End: Complemental strand, 41341669 - 41341446
Alignment:
Q  284 gacacagaaatgttgtctttgtataacacggctattgttggggagtccggggagc---------ggcaatgggccaaacgtccatgaccataagagactt 374  Q
    ||||| |||||||||| |||| || ||||| ||||||||||||||| ||||||||         |||||||||||||||||||| ||| |||||||||||    
T  41341669 gacacggaaatgttgtatttgcatcacacgactattgttggggagtacggggagccccaggagcggcaatgggccaaacgtccaggactataagagactt 41341570  T
Q  375 aaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacata 474  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  41341569 aaacaccacattcttaccaaaaaccttaaggcaatgagtgtatgggttccctctcttatatatcctttgtctcctccattcctagtc-atgtgggacata 41341471  T
Q  475 atcactcacacttgattacccaata 499  Q
    |||||||||||||||||||||||||    
T  41341470 atcactcacacttgattacccaata 41341446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 41342050 - 41341894
Alignment:
Q  18 attctcactcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggcca 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||| |||||||||||||    
T  41342050 attctcactcaaagtcctattatg-cgatgctccttcaacatatcacctaaaatcttgtccaattctttagaaaaaaatttcattgccttcacatggcca 41341952  T
Q  118 ccaaaatcaaaccattttagaaaaaggaagagcatcacccaccgtgaacacccctaac 175  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  41341951 ccaaaatcaaaccattttagaaaagggaagagcaccacccaccgtgaacacccctaac 41341894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 323 - 497
Target Start/End: Complemental strand, 5963849 - 5963675
Alignment:
Q  323 ggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgag-tgtatgagt 421  Q
    |||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| || | || | |||| ||    
T  5963849 ggggagccccgggagcggcaatgggtcaaacgtccaggaccataagagacttaaacaccacactcttacccaaaaccttaaggca-tcagatctatgggt 5963751  T
Q  422 tccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5963750 tccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcacacacacttgattacccaa 5963675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 41341810 - 41341697
Alignment:
Q  175 cccaaccaacattggaagaacaatggttttactcaattgagtaaaacattgtttcaagtccaccaacac--agtttgatgacttgttctctctactacac 272  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  41341810 cccaaccaacattggaagaacaatgtttttactcaattgagtaaaacattgtttcaagtccaccaacacatagtttgatgacttgttctctctactacac 41341711  T
Q  273 caaacattgtagac 286  Q
    ||||||||||||||    
T  41341710 caaacattgtagac 41341697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 333 - 497
Target Start/End: Complemental strand, 34103710 - 34103546
Alignment:
Q  333 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctta 432  Q
    ||||||||||||||| |||||||| | | |||||||||| |||||||||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||    
T  34103710 gggagcggcaatgggtcaaacgtctaggtccataagagatttaaacaccacactcttattcaaaaccttaaggcaatgagtttatgagttctctctctta 34103611  T
Q  433 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    |||||| ||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||    
T  34103610 tatatcctttatttcctccatttctattcgatgtggaacataatcactcacacttgattatccaa 34103546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 386 - 497
Target Start/End: Complemental strand, 14169037 - 14168926
Alignment:
Q  386 tcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacac 485  Q
    ||||| ||||||| ||||| |||||||  |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||    
T  14169037 tcttacccaaaactttaaggcaatgagcttatgggttccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcccttacac 14168938  T
Q  486 ttgattacccaa 497  Q
    ||||||| ||||    
T  14168937 ttgattatccaa 14168926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 491
Target Start/End: Complemental strand, 13112649 - 13112535
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| ||||||||||||||||||||||||| || |||| ||  |||||||||||||||   ||| | ||| ||| ||||||||||||||| || ||    
T  13112649 acaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattat 13112550  T
Q  477 cactcacacttgatt 491  Q
    |||||||||||||||    
T  13112549 cactcacacttgatt 13112535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 377 - 491
Target Start/End: Complemental strand, 13042651 - 13042537
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| ||||||||||||||||||| ||||| || |||| ||  |||||||||||||||   ||| | ||| ||| ||||||||||||||| || ||    
T  13042651 acaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattat 13042552  T
Q  477 cactcacacttgatt 491  Q
    |||||||||||||||    
T  13042551 cactcacacttgatt 13042537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 3294931 - 3294982
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3294931 tcctccattcctagtcgatatgggacataatcactcacacttgattacccaa 3294982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 13042776 - 13042710
Alignment:
Q  425 ctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||||||||   ||| | ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  13042776 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatt 13042710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 13112774 - 13112708
Alignment:
Q  425 ctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||||||||   ||| | ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  13112774 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatt 13112708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 6500934 - 6500893
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatg 418  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  6500934 acaccacactcttatccaaaaccttaaggcaatgagtttatg 6500893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 317 - 499
Target Start/End: Original strand, 22605241 - 22605423
Alignment:
Q  317 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 416  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||    
T  22605241 attgttggggagccccgggagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacattcttacccaaaaccttaaggcaatgggttta 22605340  T
Q  417 tgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaata 499  Q
    || ||| || |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22605341 tgggtttccactcttatatatcctttgtttcctccattcctagtcgatgtggaacataatcactcacacttgattacccaata 22605423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 371 - 497
Target Start/End: Original strand, 21130097 - 21130223
Alignment:
Q  371 acttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtggga 470  Q
    |||||||||||||| ||||||||||||||||||| |||||  | |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  21130097 acttaaacaccacactcttatccaaaaccttaaggcaatggatttatgggttccctctcttatatatcttttgtttcctccattcctagtcgatgtggga 21130196  T
Q  471 cataatcactcacacttgattacccaa 497  Q
    |||||||||||||||||||||||||||    
T  21130197 cataatcactcacacttgattacccaa 21130223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 336 - 484
Target Start/End: Original strand, 22605025 - 22605173
Alignment:
Q  336 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 435  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||| || |||||||||||| ||||||| |||| || ||||  |||||||||||||||    
T  22605025 agcggcaatgggccaaatgtccaagaccataagagagttaaacacctcactcttatccaaaagcttaagaaaatgggtttatggattccctctcttatat 22605124  T
Q  436 atcatttgtctcctccattcctagtcgatgtgggacataatcactcaca 484  Q
    ||| ||||| |||||| ||||||||||||||||||||||||||| ||||    
T  22605125 atcctttgtttcctccgttcctagtcgatgtgggacataatcacccaca 22605173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 2366741 - 2366594
Alignment:
Q  27 caaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatca 126  Q
    |||| |||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |  |||||| | ||||||||||||||||||||||    
T  2366741 caaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatca 2366642  T
Q  127 aaccattttagaaaaaggaagagcatcacccaccgtgaacacccctaac 175  Q
    |||||||||||  |||||||  ||||| || |  |||||||||||||||    
T  2366641 aaccattttag-taaaggaatggcatctcctattgtgaacacccctaac 2366594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 2362142 - 2361987
Alignment:
Q  19 ttctcactcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccac 118  Q
    |||| ||||||| |||| ||||||||  |||| | |||||  ||||||||||||||||||||||||||||||| |  |||||| | ||||||||||||||    
T  2362142 ttcttactcaaactccttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccac 2362043  T
Q  119 caaaatcaaaccattttagaaaaaggaagagcatcacccaccgtgaacacccctaac 175  Q
    ||||||||||||||||||| ||||||||  ||||| || |  |||||||||||||||    
T  2362042 caaaatcaaaccattttag-aaaaggaatggcatctcctattgtgaacacccctaac 2361987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 2356406 - 2356308
Alignment:
Q  66 taaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatcaaaccattttagaaaaaggaagagcatcacccaccgtgaa 165  Q
    ||||||| |||||||||| ||||||| ||||||||| |  ||||||||||||||||||||||||| || || || |||||| |||||| |||||||||||    
T  2356406 taaaatcatgtccaattccttagaagtttttttcatagctttcacatggccaccaaaatcaaaccgttcta-aacaaggaatagcatctcccaccgtgaa 2356308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 2349801 - 2349664
Alignment:
Q  26 tcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatc 125  Q
    |||||||||| |||||||||||||||||||||   ||||||||||| | ||||| |||  |||||| ||  | ||| | ||||| ||| |||||||||||    
T  2349801 tcaaagtccttttatggcgatgctccttcaaccactcacctaaaatttcgtccatttccgtagaagtttcatccatggccttcatatgaccaccaaaatc 2349702  T
Q  126 aaaccattttagaaaaaggaagagcatcacccaccgtga 164  Q
    ||||||||||| || |||||| | |||| ||||||||||    
T  2349701 aaaccatttta-aacaaggaataacatctcccaccgtga 2349664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 318 - 491
Target Start/End: Original strand, 7301569 - 7301744
Alignment:
Q  318 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaa-ccttaagacaatgagtgt 415  Q
    ||||||||||||  |||||||| |||||||| |||| || | ||||| ||||||||||| |||||| | ||||| |||||| |||||||| | |  || |    
T  7301569 ttgttggggagtttggggagcgacaatgggctaaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtat 7301668  T
Q  416 atgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||| || |||||| |||||||||     | | |||||||  |||||||||||||||||||| ||||||||||||||    
T  7301669 atgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatt 7301744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 9362847 - 9362922
Alignment:
Q  324 gggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaacc 399  Q
    ||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| | | ||| ||||||||    
T  9362847 gggagccccgggagcggcaatgggacaaacgtccaggaccataagagacttaaacaccatactattacccaaaacc 9362922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 491
Target Start/End: Original strand, 11637767 - 11637881
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| |||||||||||| |||||||||||| || |||| ||  ||||||||||||||    ||| | || || | ||||||||||| |||||| ||    
T  11637767 acaccacactcttatccaaaatcttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgttggacattat 11637866  T
Q  477 cactcacacttgatt 491  Q
    |||||||||||||||    
T  11637867 cactcacacttgatt 11637881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 449 - 491
Target Start/End: Original strand, 21297251 - 21297293
Alignment:
Q  449 tccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  21297251 tccattcctagtcgatgtgggacacaatcactcacacttgatt 21297293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 2338757 - 2338656
Alignment:
Q  27 caaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatca 126  Q
    ||||||||| ||||||||| |||||||||||   ||| | |||||||||||||| || || |||| || |||||| | ||||||||  ||||||||||||    
T  2338757 caaagtccttttatggcgacgctccttcaaccactcatcaaaaatcttgtccaactccttggaagtttctttcatggtcttcacataaccaccaaaatca 2338658  T
Q  127 aa 128  Q
    ||    
T  2338657 aa 2338656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 487
Target Start/End: Original strand, 7301415 - 7301456
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacactt 487  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  7301415 tcctccatttctagtcgatgtgggacataatcactcacactt 7301456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 2361903 - 2361795
Alignment:
Q  175 cccaaccaacattggaagaacaatggttttactcaattgagtaaaacattgtttcaagtccaccaacac--agtttgatgacttgttctctctactacac 272  Q
    |||||||| || ||||||||||||| |   ||| ||||||||||| ||||| || || ||||||||| |  |||||||||||| ||||| | ||||| ||    
T  2361903 cccaaccagcactggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtagtttgatgactcgttctttttactaaac 2361804  T
Q  273 caaacattg 281  Q
    |||||||||    
T  2361803 caaacattg 2361795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 2366507 - 2366401
Alignment:
Q  175 cccaaccaacattggaagaacaatggttttactcaattgagtaaaacattgtttcaagtccaccaacac--agtttgatgacttgttctctctactacac 272  Q
    |||||||| |||||||||||||||  |   |||||||||||| || ||||| ||||  |||||||||||  ||||||||||||  |||| | ||||| ||    
T  2366507 cccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgcttcatctccaccaacacgtagtttgatgactcattctttttactaaac 2366408  T
Q  273 caaacat 279  Q
    |||||||    
T  2366407 caaacat 2366401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 491
Target Start/End: Complemental strand, 6250113 - 6250082
Alignment:
Q  460 tcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||||||||||||||||||||||||||    
T  6250113 tcgatgtgggacataatcactcacacttgatt 6250082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 21118923 - 21118966
Alignment:
Q  332 ggggagcggcaatgggccaaacgtccatgaccataagagactta 375  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  21118923 ggggagcggcaatgggccagacgtccaggactataagagactta 21118966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 326 - 497
Target Start/End: Complemental strand, 48071549 - 48071378
Alignment:
Q  326 gagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccc 425  Q
    |||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||  || |||||||||||    
T  48071549 gagtcccggaagcggcaatgggccaaacgtccaagatcataagagacttaaacatcacactcttatccaaaaccttaagacaataggtttatgagttccc 48071450  T
Q  426 tctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48071449 tctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactgacacttgattacccaa 48071378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 335 - 494
Target Start/End: Complemental strand, 8802358 - 8802199
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 434  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||| | |||||||||||| |||| |||||||||||||||    
T  8802358 gagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacgctcttactcaaaacataaagacaatgagtttatgggttccctctcttata 8802259  T
Q  435 tatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacc 494  Q
    |||| ||||| |||||||||||| ||  |||||| | |||||||||||||||||||||||    
T  8802258 tatcctttgtttcctccattcctcgttaatgtggaatataatcactcacacttgattacc 8802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 317 - 497
Target Start/End: Original strand, 27391755 - 27391934
Alignment:
Q  317 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 416  Q
    ||||||||||||| ||||||||||||||| ||||||||| || ||| ||||||||||||||||||||| ||||| | ||||||||||| || ||  | ||    
T  27391755 attgttggggagttcggggagcggcaatgagccaaacgttcaagactataagagacttaaacaccacactcttacctaaaaccttaaggcagtggattta 27391854  T
Q  417 tgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    || ||| | | ||||||||||| ||||  ||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  27391855 tgggtttcatgtcttatatatcctttgcttcctccattccta-ttgatgtgggacataatcactcacacttgattatccaa 27391934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 335 - 497
Target Start/End: Complemental strand, 8802654 - 8802485
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 434  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| ||||| |||| |||||| ||||||||    
T  8802654 gagcggcaatgggtcaaatgtccatgaccataagagacttaaacaccacactcttacccaaaatcttaaaacagtgagtttatgggttccccctcttata 8802555  T
Q  435 tatcatttgtct-cctccat------tcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    |||| ||||| | ||||  |      ||||| ||||||||||||||||||||||||||| ||||||||||    
T  8802554 tatcctttgtttccctctcttatatatcctaatcgatgtgggacataatcactcacactagattacccaa 8802485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 11776439 - 11776505
Alignment:
Q  423 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttga 489  Q
    |||||||||||||||    ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  11776439 ccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacacttga 11776505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 491
Target Start/End: Original strand, 21416187 - 21416301
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| ||||| |||||||| |||| ||||| || |||| ||  |||||||||||||||   | | |  |||||  ||||| |||||||||||||||    
T  21416187 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaatttttgttccatgtctagttgatgtgggacataat 21416286  T
Q  477 cactcacacttgatt 491  Q
    |||||||||||||||    
T  21416287 cactcacacttgatt 21416301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 489
Target Start/End: Original strand, 11776179 - 11776222
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttga 489  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  11776179 tcctccattcctagttgatgtgggacataatcattcacacttga 11776222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 9901755 - 9901714
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatg 418  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  9901755 acaccacactcttacccaaaaccttaagacaatgagtttatg 9901714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 434
Target Start/End: Original strand, 34218080 - 34218137
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 434  Q
    |||||||| ||||| ||||||||||||||||||| || ||||||| | ||| ||||||    
T  34218080 acaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttata 34218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 45100221 - 45100184
Alignment:
Q  452 attcctagtcgatgtgggacataatcactcacacttga 489  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  45100221 attcctagtcaatgtggaacataatcactcacacttga 45100184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 1085292 - 1085340
Alignment:
Q  375 aaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttc 423  Q
    |||||||||| ||||| ||||||||||||| |||||||| |||| ||||    
T  1085292 aaacaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 1085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 491
Target Start/End: Complemental strand, 2463511 - 2463443
Alignment:
Q  423 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||||||||||   | | ||||||||| |||  | |||||||||||||| ||||||||||||||    
T  2463511 ccctctcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttgatt 2463443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 321 - 497
Target Start/End: Original strand, 17731894 - 17732070
Alignment:
Q  321 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 420  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| |||||  |||||||||||| ||||| || |||| |    
T  17731894 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactcttactcaaaaccttaaggcaatgggtttatggg 17731993  T
Q  421 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17731994 ttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttgattatccaa 17732070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 321 - 497
Target Start/End: Original strand, 19033125 - 19033301
Alignment:
Q  321 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 420  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| |||||  |||||||||||| ||||| || |||| |    
T  19033125 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactcttactcaaaaccttaaggcaatgggtttatggg 19033224  T
Q  421 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19033225 ttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttgattatccaa 19033301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 360 - 497
Target Start/End: Original strand, 16870988 - 16871125
Alignment:
Q  360 gaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctag 459  Q
    ||||||||||||||||||||| ||| ||||| | ||||||||||| |||||||| |||| ||||||||||||||||||  ||||| ||||||||||| |     
T  16870988 gaccataagagacttaaacacgacactcttacctaaaaccttaaggcaatgagtttatgggttccctctcttatatattctttgtttcctccattccaaa 16871087  T
Q  460 tcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16871088 tcgatgtgggacataatcactcacacttgattacccaa 16871125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 377 - 497
Target Start/End: Original strand, 54017594 - 54017714
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| ||||| ||||||||||||| ||||| || ||||  |||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttcttccattcctagtcgatgtgagacataat 54017693  T
Q  477 cactcacacttgattacccaa 497  Q
    |||||||||||||||||||||    
T  54017694 cactcacacttgattacccaa 54017714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 4303880 - 4303756
Alignment:
Q  46 tgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatcaaaccattttagaaaaagga 145  Q
    ||||||| ||||| |||||||| |||||||||||  ||||| | || ||||||||| | |||||||||||| ||||||||||||||||||| ||||||||    
T  4303880 tgctcctccaacaaatcacctataatcttgtccatctctttggtagcttttttcatggccttcacatggcccccaaaatcaaaccatttta-aaaaagga 4303782  T
Q  146 agagcatcacccaccgtgaacacccc 171  Q
    |||||||| ||||| |||||||||||    
T  4303781 agagcatctcccactgtgaacacccc 4303756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 321 - 480
Target Start/End: Complemental strand, 23162072 - 23161913
Alignment:
Q  321 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 420  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||    | |||||| |||||| ||  | || ||||||    
T  23162072 ttggggagtccggggagcgacaatgggccaaacgtccaggaccataagaaaattaaacaccacatctccacccaaaatcttaaggcatcgggtatatgag 23161973  T
Q  421 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcact 480  Q
    |  |||||||||||||||   ||| |||||||||| |||||||||  |||||||||||||    
T  23161972 tcacctctcttatatatctaatgtttcctccattcttagtcgatgcaggacataatcact 23161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 363 - 461
Target Start/End: Original strand, 17735023 - 17735121
Alignment:
Q  363 cataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtc 461  Q
    ||||||||||||||||||| || ||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  17735023 cataagagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 17735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 363 - 461
Target Start/End: Original strand, 19036292 - 19036390
Alignment:
Q  363 cataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtc 461  Q
    ||||||||||||||||||| || ||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  19036292 cataagagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 19036390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 392 - 491
Target Start/End: Original strand, 43978636 - 43978735
Alignment:
Q  392 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||||||| ||||  || |||||||  |||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43978636 ccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttgatt 43978735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 333 - 428
Target Start/End: Original strand, 16869799 - 16869894
Alignment:
Q  333 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctct 428  Q
    ||||||||||||| || |||  |||| |||| |||||||||||||||||||| ||||   |||||||||||| |||||||| |||| |||||||||    
T  16869799 gggagcggcaatgtgctaaatatccacgaccttaagagacttaaacaccacactcttgctcaaaaccttaaggcaatgagtttatgtgttccctct 16869894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 23162261 - 23162187
Alignment:
Q  413 tgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 487  Q
    ||||||||| ||||||||||||| ||    || ||||||||||||| ||||||||||||||||||||||||||||    
T  23162261 tgtatgagtcccctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactt 23162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 497
Target Start/End: Original strand, 40195913 - 40195986
Alignment:
Q  424 cctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    |||||||||||||||    || ||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  40195913 cctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcccaa 40195986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 16868394 - 16868470
Alignment:
Q  342 aatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatg 418  Q
    |||||||||||||| ||  || |||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||    
T  16868394 aatgggccaaacgttcagaactataagagacttaaacatcacactcttatccaaaatcttaaggcaatgagtttatg 16868470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 489
Target Start/End: Complemental strand, 43481631 - 43481588
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttga 489  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  43481631 tcctccattcctagtcgatgtgagacataatcactcacacttga 43481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 43978984 - 43979035
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    |||||||||| |||||||||||||||||||||||||||| |||||| |||||    
T  43978984 tcctccattcttagtcgatgtgggacataatcactcacatttgatttcccaa 43979035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 16869614 - 16869676
Alignment:
Q  433 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattaccc 495  Q
    |||||| ||||| ||||| ||||||| ||||  ||||||||||||||||||||||||||||||    
T  16869614 tatatcctttgtttcctctattcctaatcgacatgggacataatcactcacacttgattaccc 16869676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 491
Target Start/End: Original strand, 48127861 - 48127975
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| ||||||||||||| ||||  ||||| || |||| ||  ||||||||||||||||   || ||| |||||  |||| |||||| ||||||||    
T  48127861 acaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttatatatcaaacgtttccaccatttatagttgatgtgtgacataat 48127960  T
Q  477 cactcacacttgatt 491  Q
    |||||||| ||||||    
T  48127961 cactcacatttgatt 48127975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 499
Target Start/End: Complemental strand, 23161913 - 23161830
Alignment:
Q  415 tatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaata 499  Q
    |||||||  |||||||||||||||   | | ||||| |||| |||||||||||| |||||||||||||||||||||| |||||||    
T  23161913 tatgagtcacctctcttatatatctaatatttcctctattcttagtcgatgtgg-acataatcactcacacttgatttcccaata 23161830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 491
Target Start/End: Original strand, 23162467 - 23162509
Alignment:
Q  449 tccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||| || ||||| ||||||||||||||||||||||||||    
T  23162467 tccattcataatcgatatgggacataatcactcacacttgatt 23162509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 53981578 - 53981541
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcac 483  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  53981578 tcctccatttctagtcgatgtgggacttaatcactcac 53981541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 37990685 - 37990729
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 421  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  37990685 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 37990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 40196115 - 40196155
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagactta 375  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  40196115 gagcggcaatgggccaaacatctaagaccataagagactta 40196155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 336 - 495
Target Start/End: Complemental strand, 1868204 - 1868045
Alignment:
Q  336 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 435  Q
    ||||||||||||||||||||||| || |||||||||||||| ||  ||| ||||| ||||||| ||||| ||||| || |||| ||||||||||||||||    
T  1868204 agcggcaatgggccaaacgtccaggatcataagagacttaatcataacactcttacccaaaactttaaggcaatgggtttatgggttccctctcttatat 1868105  T
Q  436 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattaccc 495  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1868104 atcatttatttcctccattcttagtcgatgtgggacataatcactcacacttgattaccc 1868045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 374 - 489
Target Start/End: Complemental strand, 51681653 - 51681538
Alignment:
Q  374 taaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacat 473  Q
    ||||||||||| ||||| |||||| |||||| ||||| || ||||||| |||||||||||||||      | ||||| |||||||||| |||||||||||    
T  51681653 taaacaccacactcttacccaaaatcttaaggcaatgggtatatgagtcccctctcttatatatttcacatttcctcaattcctagtcaatgtgggacat 51681554  T
Q  474 aatcactcacacttga 489  Q
    ||||||| ||||||||    
T  51681553 aatcacttacacttga 51681538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 5805532 - 5805644
Alignment:
Q  22 tcactcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaa 121  Q
    ||||||||||| || ||||||||  ||||||| ||||| ||||||||||| |  |||||||| ||||||| ||  ||||| | ||| ||||| |||||||    
T  5805532 tcactcaaagttcttttatggcggcgctcctttaacatctcacctaaaatttcatccaattccttagaagtttcattcatggcctttacatgaccaccaa 5805631  T
Q  122 aatcaaaccattt 134  Q
    |||||||||||||    
T  5805632 aatcaaaccattt 5805644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 11197338 - 11197227
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| ||||| |||||||| |||| ||||| || |||| ||  |||||||||||||||    || ||||||||| |||||||||||| | ||||||    
T  11197338 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataat 11197239  T
Q  477 cactcacacttg 488  Q
    ||||||||||||    
T  11197238 cactcacacttg 11197227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 491
Target Start/End: Complemental strand, 10396526 - 10396414
Alignment:
Q  379 accacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatca 478  Q
    |||||| |||||||||||||| |||| ||||| || |||| ||  |||||||||||||||     | ||||||||| |||||| || || ||||||||||    
T  10396526 accacactcttatccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacatttcctccatttctagtcaatatgagacataatca 10396427  T
Q  479 ctcacacttgatt 491  Q
    |||||||||||||    
T  10396426 ctcacacttgatt 10396414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 16559456 - 16559390
Alignment:
Q  319 tgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacat 385  Q
    |||||||||||||||||||||||||||| ||||||||  | ||  |||||||||||| |||||||||    
T  16559456 tgttggggagtccggggagcggcaatggaccaaacgtttaggattataagagacttagacaccacat 16559390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 10396174 - 10396129
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||    
T  10396174 tcctccatttcttgtcgatgtgagacataatcactcacacttgatt 10396129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 44621116 - 44621073
Alignment:
Q  375 aaacaccacattcttatccaaaaccttaagacaatgagtgtatg 418  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||    
T  44621116 aaacaccacactcttacccaaaaccttaagacaatgagtttatg 44621073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 487
Target Start/End: Complemental strand, 47680778 - 47680623
Alignment:
Q  333 gggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctt 431  Q
    ||||||| ||||| |  ||||||||| ||||| ||||||||||| |||||||||    | ||||||||||||| ||    || |||| ||  |||||| |    
T  47680778 gggagcgacaatgagttaaacgtccaggaccaataagagacttagacaccacatctccacccaaaaccttaaggcatcaggtatatgggtctcctctcat 47680679  T
Q  432 atatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 487  Q
    ||||||    ||| |||||||||  || ||||||||||||||||||||||||||||    
T  47680678 atatattcaatgtttcctccatttataatcgatgtgggacataatcactcacactt 47680623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 47681202 - 47681151
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||| ||| |||||| ||||||||||||||||||||| ||| |||||    
T  47681202 tcctccatttctaatcgatgcgggacataatcactcacactttatttcccaa 47681151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 497
Target Start/End: Complemental strand, 16559348 - 16559299
Alignment:
Q  448 ctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||| |||||    
T  16559348 ctccattcctaatcgatgtgtaacataatcgctcacacttgatttcccaa 16559299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 489
Target Start/End: Original strand, 26473611 - 26473758
Alignment:
Q  341 caatgggccaaacgtccatgacc--ataagagacttaaacaccacattcttatcc-aaaaccttaagacaatgagtgtatgagttccctctcttatatat 437  Q
    |||||||| ||||||||| ||||  |||||||||||| ||||||| ||||   || |||||||||| |||    || ||||||| |||||||||||||||    
T  26473611 caatgggctaaacgtccaggaccctataagagacttagacaccac-ttctccacctaaaaccttaaaacatcaggtatatgagt-ccctctcttatatat 26473708  T
Q  438 catttgtctcctccattcctagtcgatgtgggacataatcactcacacttga 489  Q
    |   ||| | ||||||||||| ||||||||||  ||||||||||||| ||||    
T  26473709 ccaatgttttctccattcctaatcgatgtggg--ataatcactcacagttga 26473758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 491
Target Start/End: Original strand, 11307382 - 11307450
Alignment:
Q  423 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||||||||||    || ||||||||| ||||| |||||| |||||| ||| ||||||||||||    
T  11307382 ccctctcttatatatccaaggtttcctccatttctagttgatgtgagacatagtcagtcacacttgatt 11307450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 34646693 - 34646737
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 421  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  34646693 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 34646737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 45496917 - 45496881
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagt 413  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  45496917 acaccacactcttacccaaaaccttaagacaatgagt 45496881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 364 - 497
Target Start/End: Original strand, 12156691 - 12156824
Alignment:
Q  364 ataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcga 463  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||| || |||||||||  ||||||||||||| ||||| ||||||||||||| ||||    
T  12156691 ataagagacttaaacatcacactcttacccaaaaccttaagacaatgggtttatgagttctttctcttatatatcttttgtttcctccattcctaatcga 12156790  T
Q  464 tgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||||||||||||||||||||||||    
T  12156791 tgtgggacataatcactcacacttgattacccaa 12156824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 492
Target Start/End: Original strand, 5981737 - 5981894
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttat 433  Q
    |||||||||||||| |||| || | ||||| ||||||||||| |||||||||    | ||||||||||||| ||||| || |||| || |||||||||||    
T  5981737 gagcggcaatgggctaaacttcaaggaccagtaagagacttagacaccacatctccacccaaaaccttaaggcaatg-gtttatgggtcccctctcttat 5981835  T
Q  434 atatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatta 492  Q
    |||||    || ||||||||||||| | |||||||||||||||| ||||||||||||||    
T  5981836 atatccaacgtttcctccattcctaattgatgtgggacataatccctcacacttgatta 5981894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 491
Target Start/End: Original strand, 5981451 - 5981602
Alignment:
Q  341 caatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatca 439  Q
    |||||||| |||||||||  |||| ||||||||||| ||||||||||   | ||||||||||||| ||    ||  ||| || ||||||||||||||||     
T  5981451 caatgggctaaacgtccagaaccaataagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatcc 5981550  T
Q  440 tttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
       || | ||||||||||||||||||||||||||||||||||||||||||||    
T  5981551 aacgttttctccattcctagtcgatgtgggacataatcactcacacttgatt 5981602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 491
Target Start/End: Complemental strand, 14028448 - 14028323
Alignment:
Q  366 aagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatg 465  Q
    |||||||||  ||||  |||||||||||||||  ||||| ||   ||| |||||||   ||||||||||||||   ||| ||||| ||||||||||||||    
T  14028448 aagagacttggacactgcattcttatccaaaattttaaggcatcaagtatatgagtctgctctcttatatatccaatgtttcctctattcctagtcgatg 14028349  T
Q  466 tgggacataatcactcacacttgatt 491  Q
    | ||||||||||||||||||||||||    
T  14028348 taggacataatcactcacacttgatt 14028323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 2954342 - 2954383
Alignment:
Q  448 ctccattcctagtcgatgtgggacataatcactcacacttga 489  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  2954342 ctccattcctagtcgatgtgggaaataatcactcacacttga 2954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 2954625 - 2954666
Alignment:
Q  448 ctccattcctagtcgatgtgggacataatcactcacacttga 489  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  2954625 ctccattcctagtctatgtgggacataatcactcacacttga 2954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 11576082 - 11576036
Alignment:
Q  451 cattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  11576082 cattcttagtcgacgtgggacataatgactcacacttgattacccaa 11576036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 2954494 - 2954562
Alignment:
Q  318 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacc-ataagagacttaaacaccacat 385  Q
    |||||||| || || ||||||||||||||| |||||||||| |||| |||||||||||| || ||||||    
T  2954494 ttgttgggaagccccgggagcggcaatgggtcaaacgtccaggaccaataagagacttagacgccacat 2954562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 6876906 - 6876949
Alignment:
Q  375 aaacaccacattcttatccaaaaccttaagacaatgagtgtatg 418  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||    
T  6876906 aaacaccacactcttacccaaaaccctaagacaatgagtgtatg 6876949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 481
Target Start/End: Original strand, 3671262 - 3671291
Alignment:
Q  452 attcctagtcgatgtgggacataatcactc 481  Q
    ||||||||||||||||||||||||||||||    
T  3671262 attcctagtcgatgtgggacataatcactc 3671291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Complemental strand, 4840584 - 4840531
Alignment:
Q  423 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    ||||||||||||||||   ||| |||||||||| || |||||||||||||||||    
T  4840584 ccctctcttatatatccaatgtttcctccattcatattcgatgtgggacataat 4840531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 487
Target Start/End: Original strand, 29103329 - 29103370
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacactt 487  Q
    |||||||||||||||||||||| ||||| || ||||||||||    
T  29103329 tcctccattcctagtcgatgtgagacatgattactcacactt 29103370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 3669799 - 3669755
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 421  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  3669799 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 3669755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 34834988 - 34834944
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 421  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  34834988 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 34834944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 338 - 493
Target Start/End: Complemental strand, 197878 - 197725
Alignment:
Q  338 cggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatat 437  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||  || |||||| |||||  | ||||  |||||||||||||||||    
T  197878 cggcaatgagccaaacgtccaggaccataagagacttaaacaccacactcttatcc--aatcttaaggcaatggatttatggattccctctcttatatat 197781  T
Q  438 catttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattac 493  Q
    | ||||| ||  | |||| |||||||| |||| |||||||||||||| ||||||||    
T  197780 cctttgtttctgctattcttagtcgatatgggtcataatcactcacatttgattac 197725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 337 - 487
Target Start/End: Original strand, 27686529 - 27686680
Alignment:
Q  337 gcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 435  Q
    |||||||||| | ||| ||||| ||||| ||||||||||| |||||||| ||||| ||||||||| ||| |||   |  ||||||||  |||||||||||    
T  27686529 gcggcaatggactaaatgtccaagaccaataagagacttagacaccacactcttacccaaaacctcaagtcaacagggatatgagttttctctcttatat 27686628  T
Q  436 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 487  Q
    |||   ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  27686629 atctaatgtttcctccattcctagtcgatgtggaacataatcactcacactt 27686680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 497
Target Start/End: Original strand, 25294879 - 25294953
Alignment:
Q  423 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||||||   ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  25294879 ccctctcttatatatccaatgtttcctccattcctagccaatgtgggacataatcactcacacttgattacccaa 25294953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 497
Target Start/End: Original strand, 4392197 - 4392358
Alignment:
Q  336 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 435  Q
    |||||||||||| |||||||| | |||||||||  ||||| |||||||||    |||||||| |||||| ||    || |||| ||  ||||| ||||||    
T  4392197 agcggcaatgggtcaaacgtcaaggaccataagtcacttatacaccacatctccatccaaaatcttaaggcatcaggtatatgggtctcctctgttatat 4392296  T
Q  436 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    |||   ||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  4392297 atccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttgatttcccaa 4392358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 392 - 497
Target Start/End: Complemental strand, 15327953 - 15327848
Alignment:
Q  392 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||| |||||||   || |||| || ||||||||||||||||    || |||||||||||||||||||||| |||||||||||||||||||||||    
T  15327953 ccaaaacctcaagacaacaggtatatgggtcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacacttgatt 15327854  T
Q  492 acccaa 497  Q
     |||||    
T  15327853 tcccaa 15327848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 25293589 - 25293657
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaa 403  Q
    ||||||||||||| ||||| | || ||||||||||||||| ||||||||| ||||| ||||||||||||    
T  25293589 gagcggcaatgggtcaaacatacaggaccataagagacttgaacaccacactcttacccaaaaccttaa 25293657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 487
Target Start/End: Original strand, 26231641 - 26231809
Alignment:
Q  318 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 416  Q
    ||||||||||||||||  ||||||||||||| ||||||    ||||| ||||||||||  |||||||||    | |||||||||||||  |||  || ||    
T  26231641 ttgttggggagtccggaaagcggcaatgggctaaacgttatggaccactaagagacttggacaccacatctccacccaaaaccttaaggtaattggtata 26231740  T
Q  417 tgagttccctctcttatatat--catttgtctcctccattcctagtcgatgtgggacataatcactcacactt 487  Q
    || || |||||||||||||||  ||||    ||||| ||||||| ||||||||||||||||| ||| ||||||    
T  26231741 tgggtcccctctcttatatataacatt----tcctcaattcctaatcgatgtgggacataattacttacactt 26231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 4392025 - 4392076
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||| |||||    
T  4392025 tcctccattcctactcgatgtgggacataatcacttacagttgatttcccaa 4392076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 489
Target Start/End: Complemental strand, 5821821 - 5821726
Alignment:
Q  392 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttga 489  Q
    ||||||||||||| |||||  |||||||||   ||||||||||||||   ||| ||||||||||    |||||||| |||||||||||||||||||||    
T  5821821 ccaaaaccttaaggcaatg--tgtatgagtcttctctcttatatatccaatgtttcctccattctcgatcgatgtgagacataatcactcacacttga 5821726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 25294960 - 25294997
Alignment:
Q  460 tcgatgtgggacataatcactcacacttgattacccaa 497  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25294960 tcgatgtgggacataatcactcacaattgattacccaa 25294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 31973450 - 31973495
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||    
T  31973450 tcctccatttctagtcggtgtgagacataatcactcacacttgatt 31973495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Complemental strand, 12466324 - 12466281
Alignment:
Q  448 ctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  12466324 ctccatttctagttgatgtgggacataatcacttacacttgatt 12466281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 24600360 - 24600406
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttc 423  Q
    |||||||| |||||  ||||||||||||||||||||| |||||||||    
T  24600360 acaccacactcttacacaaaaccttaagacaatgagtttatgagttc 24600406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 39066246 - 39066280
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatga 411  Q
    |||||||| ||||||||||||||||||||||||||    
T  39066246 acaccacactcttatccaaaaccttaagacaatga 39066280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 32594762 - 32594803
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatg 418  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  32594762 acaccacactcttacccaaaaccttaagacaatgagtttatg 32594803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 34665924 - 34665969
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||| ||| ||||||||||||||| |||||||||||||| |||||    
T  34665924 tcctcaatttctagtcgatgtgggatataatcactcacacatgatt 34665969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 381 - 491
Target Start/End: Original strand, 13792544 - 13792654
Alignment:
Q  381 cacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcact 480  Q
    |||| ||||| ||||||||| ||| ||||| ||||| | ||  ||||||||||||||||  | | ||||||||| ||||| |||||||||||||||||||    
T  13792544 cacactcttacccaaaacctcaagtcaatgggtgtacgggtctcctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcact 13792643  T
Q  481 cacacttgatt 491  Q
    |||||||||||    
T  13792644 cacacttgatt 13792654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 491
Target Start/End: Complemental strand, 28226449 - 28226335
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 476  Q
    |||||||| ||||| | |||||| |||||||||| || |||| ||  |||||||||||||||    || ||||||||| |||||||||||||||||| |     
T  28226449 acaccacactcttacctaaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaa 28226350  T
Q  477 cactcacacttgatt 491  Q
    |||||||||||||||    
T  28226349 cactcacacttgatt 28226335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 30219996 - 30220041
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||    
T  30219996 tcctccagttctagtcgatgtgggacataatcgctcacacttgatt 30220041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 491
Target Start/End: Original strand, 35448708 - 35448775
Alignment:
Q  424 cctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||||||||||   || ||||| ||| |||||||||||| ||||||||||  |||||||||||    
T  35448708 cctctcttatatatcaaacgtttcctctatttctagtcgatgtgagacataatcatacacacttgatt 35448775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 15689445 - 15689481
Alignment:
Q  377 acaccacattcttatccaaaaccttaagacaatgagt 413  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  15689445 acaccacatttttacccaaaaccttaagacaatgagt 15689481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 13412 - 13367
Alignment:
Q  446 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 491  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||    
T  13412 tcctccatttctagtcgatgtgtgacttaatcattcacacttgatt 13367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University