View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_low_17 (Length: 534)
Name: NF16077_low_17
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 2800533 - 2800033
Alignment:
| Q |
19 |
tttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
2800533 |
tttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttatgtcttaccgtcgatatccctc |
2800434 |
T |
|
| Q |
119 |
tccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagc |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2800433 |
tccagagtgacacatattgttataacctcaccagtccggacactgtcattttgcaggacttcatacaacaaatcaacattaggaaagcgattacaaaagc |
2800334 |
T |
|
| Q |
219 |
gagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2800333 |
gagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccc |
2800234 |
T |
|
| Q |
319 |
tgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgacta |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2800233 |
tgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaacatttgacta |
2800134 |
T |
|
| Q |
419 |
acttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2800133 |
acttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaacacctctctct |
2800034 |
T |
|
| Q |
519 |
g |
519 |
Q |
| |
|
| |
|
|
| T |
2800033 |
g |
2800033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 1680195 - 1680695
Alignment:
| Q |
19 |
tttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
1680195 |
tttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttttgtcttaccgtcgatatccctc |
1680294 |
T |
|
| Q |
119 |
tccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagc |
218 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1680295 |
tccagagtgacacttattgttatatcctcaccagtccggacactgtcattttgcaggacttcatactacaaatcaacattaggaaagcgattacaaaagc |
1680394 |
T |
|
| Q |
219 |
gagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1680395 |
gagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccc |
1680494 |
T |
|
| Q |
319 |
tgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgacta |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1680495 |
tgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcatcatttgacta |
1680594 |
T |
|
| Q |
419 |
acttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1680595 |
acttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaacacctctctct |
1680694 |
T |
|
| Q |
519 |
g |
519 |
Q |
| |
|
| |
|
|
| T |
1680695 |
g |
1680695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 29269709 - 29269209
Alignment:
| Q |
19 |
tttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||| | ||||| || | ||||| | |
|
|
| T |
29269709 |
tttggtatcaccaacaacaagccaccacccttcttccttggctttcggatacctaggagcatcaacaggtcctacttctgttttaccttcaagatcccgc |
29269610 |
T |
|
| Q |
119 |
tccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagc |
218 |
Q |
| |
|
|| |||||||| || ||||||| | || |||| || ||| |||| || | ||||| || || |||| ||||| ||||||||| || || ||||| | |
|
|
| T |
29269609 |
tcaagagtgacctgtagtgttatatcatccccagctcgcacattgtcgttgtccaggatctcgtatgacagatcaatattaggaaaacggttgcaaaacc |
29269510 |
T |
|
| Q |
219 |
gagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccc |
318 |
Q |
| |
|
||||||| || || | | |||| || |||||| |||||||| || || || |||||||||||| ||||||||||| | |||||||||||| |||| |
|
|
| T |
29269509 |
gagcaatatccaaaagctgagaatctgtcatgttcaacaattcccgtctctcatcatcttccatctctaataaatcaaataccgtttctatactcctccc |
29269410 |
T |
|
| Q |
319 |
tgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgacta |
418 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||| || ||||| |||||||||||||| || || |||||| |||||| || |||||||| || |
|
|
| T |
29269409 |
tgggttctcctggcatttcttagctaaatcctttgtgaagtgtggaagctgtagcagcatagaatctcgctcccacattccttgggttaccatttggctt |
29269310 |
T |
|
| Q |
419 |
acttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctct |
518 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || || | ||||||||||||| ||||| |||| |
|
|
| T |
29269309 |
acctccatggcaagaagagccatgctcagccaaccgttgctcgatattacatcaaccattgcctgcagaagcctgtttgcagaaagcagtacctccctct |
29269210 |
T |
|
| Q |
519 |
g |
519 |
Q |
| |
|
| |
|
|
| T |
29269209 |
g |
29269209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 240 - 476
Target Start/End: Complemental strand, 40469833 - 40469599
Alignment:
| Q |
240 |
aatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttctt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| | |
|
|
| T |
40469833 |
aatttggcatgtttaacaattcacgcctcgcaacatcttccatctccaataaatcaaagatggcttctatactcgtccatgagttctcctcgcatttcct |
40469734 |
T |
|
| Q |
340 |
agccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagcc |
439 |
Q |
| |
|
| ||||||| |||||||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
40469733 |
acccaaatcttttgtgaagtgaggaagtcgtagctgcatagagtcgcatccccacaatccttgtgtcaccatttgactaacttcc--aacaagaagagcc |
40469636 |
T |
|
| Q |
440 |
aaactcagccaaccattgctcgatattacatccacca |
476 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40469635 |
aaactcaggcaaccattgcttgatattacatccacca |
40469599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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