View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_18 (Length: 527)
Name: NF16077_low_18
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 509
Target Start/End: Original strand, 2289217 - 2289720
Alignment:
| Q |
20 |
atgcactatgaaaaaccaaaagatctgatctagga------ggcatacaagtttaatctcctaagtaaaacccaaatgttaaaacagaaaacaagactaa |
113 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289217 |
atgcactatgaaaaaccaaaagatctgctctaggactaggaggcatacaagtttaatctcctaagtaaaacccaaatgttaaaacagaaaacaagactaa |
2289316 |
T |
|
| Q |
114 |
aaccatccagaatgtcacagaatagctaaaacaacttcaatagcagcaccacaaaaaagttaagggcactaagtattgataaagtgcatataagaaccta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |
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| T |
2289317 |
aaccatccagaatgtcacagaatagctaaaacaacttcaatagcagcaccacaaaaaagttaagggcacaaagtattgataaagtgcatataaaaagctt |
2289416 |
T |
|
| Q |
214 |
actaccaagctttgcnnnnnnnnn-----gaagcaccaagtattaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattat |
308 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289417 |
actaccaagctttgcaacaaaaaaaaaaagaagcactaagtattaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattat |
2289516 |
T |
|
| Q |
309 |
caaccattttcttcacctgttcatcaccttgaattgtttgctattcatcacttgctgaaatttcattcttaccatgaataatatcttcaacatt---act |
405 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
2289517 |
caaccattttcttcacctgttcatcaccttgaactgtttgctattcatcacttgctgaaatttcattcttaccattaataatatcttcaacattgagact |
2289616 |
T |
|
| Q |
406 |
cactttctcagcaccttcgctttcctctgcgccggatttctcttgcttataactgctatcagctgtaccattttctttctccaattcaactggtgcttcc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289617 |
cactttctcagcaccttcgctttcctctgcgccggatttctcttgcttataactgctatcagctgtaccattttctttctccaattcaactggtgcttcc |
2289716 |
T |
|
| Q |
506 |
tctt |
509 |
Q |
| |
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|||| |
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| T |
2289717 |
tctt |
2289720 |
T |
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