View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_low_19 (Length: 525)
Name: NF16077_low_19
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 9e-99; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 247 - 483
Target Start/End: Original strand, 35842227 - 35842463
Alignment:
| Q |
247 |
atgacacttactttttccaccttatttgatttcttgtgcgccctatgcagttcatattatataatttagctnnnnnnnnnnccatgaagccatccaaaac |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
35842227 |
atgacacttactttttccaccttatttgatttcttgtgcgccctatgcagttcatattatataatttagctaaaaaaaaaacaatgaagccatccaaaac |
35842326 |
T |
|
| Q |
347 |
atgttagatatttcgtattttagaattcgaccatggttcatgagaaactcatagggttggaaaaagtaagtgtcttcagcattcacatggttcacaaatt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
35842327 |
atgttagatatttcgtattttagaattcgaccatggttcatgagaaactcatagggttggaaaaagtaagcgtcttcggcatttacatggttcacaaatt |
35842426 |
T |
|
| Q |
447 |
tgaccaatttctgttgtaaagtgtgtaaaagtataat |
483 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| |
|
|
| T |
35842427 |
tgatcagtttctgttgtaaagtgtgtaaaagtataat |
35842463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 35842010 - 35842157
Alignment:
| Q |
27 |
ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattcttagtcagattagagccagagt-gtgctttccgtgtgtggtgctg |
125 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||||| | |||||| ||| ||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
35842010 |
ttttaaatttttattttggaactgctcggaactatttggataataatcagaat----agttagattagagccggagttgtgctttccatgtgtggtgctg |
35842105 |
T |
|
| Q |
126 |
catgcaactcttgggctcaactcttgagatttgctgccttactgggctgacc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35842106 |
catgcaactcttgggctcaactcttgagatttgctgccttactgggctgacc |
35842157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 525
Target Start/End: Original strand, 35842583 - 35842619
Alignment:
| Q |
489 |
gttggacatcataattgaggttcaaatcccattcttt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35842583 |
gttggacatcataattgaggttcaaatctcattcttt |
35842619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 33220077 - 33220024
Alignment:
| Q |
27 |
ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattc |
81 |
Q |
| |
|
||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
33220077 |
ttttgaacatttactttggaa-tgagcggaaccatttggataatgagcagaattc |
33220024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 82
Target Start/End: Original strand, 23559033 - 23559062
Alignment:
| Q |
53 |
cggaaccatttggataatgagcagaattct |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23559033 |
cggaaccatttggataatgagcagaattct |
23559062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 9384661 - 9384617
Alignment:
| Q |
36 |
tttattttggaactgaacggaaccatttggataatgagcagaatt |
80 |
Q |
| |
|
||||||||| || ||| |||||||||||| ||||||||||||||| |
|
|
| T |
9384661 |
tttattttgaaaatgagcggaaccatttgaataatgagcagaatt |
9384617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 9418810 - 9418842
Alignment:
| Q |
49 |
tgaacggaaccatttggataatgagcagaattc |
81 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
9418810 |
tgaacggaaccatttggataatgaacagaattc |
9418842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 44833516 - 44833467
Alignment:
| Q |
35 |
ttttattttggaactgaacggaaccatttggataatgagcagaattctta |
84 |
Q |
| |
|
||||| ||||||| | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
44833516 |
ttttactttggaaataaacggaaccatttgggtaatgagcagaattctta |
44833467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 23608473 - 23608425
Alignment:
| Q |
35 |
ttttattttggaactgaacggaaccatttggataatgagcagaattctt |
83 |
Q |
| |
|
||||||||||| | ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
23608473 |
ttttattttgggaatgaacggaatcatttgaataatgagcagaattctt |
23608425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 11821206 - 11821160
Alignment:
| Q |
35 |
ttttattttggaactgaacggaaccatttggataatgagcagaattc |
81 |
Q |
| |
|
||||| ||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
11821206 |
ttttactttgggaatgaacgaaaccatttggataatgagcagaattc |
11821160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 45688362 - 45688306
Alignment:
| Q |
27 |
ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattctt |
83 |
Q |
| |
|
||||||| ||||| ||||| | ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
45688362 |
ttttgaacttttactttgggaatgagcagaaccatttggataatgagcggaattctt |
45688306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 5060894 - 5060845
Alignment:
| Q |
35 |
ttttattttggaactgaacggaaccatttggataatgagcagaattctta |
84 |
Q |
| |
|
||||| ||||| | ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
5060894 |
ttttactttgggaatgagcggaaccatttggataatgagtagaattctta |
5060845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 12969288 - 12969340
Alignment:
| Q |
27 |
ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaatt |
80 |
Q |
| |
|
||||||| ||||| ||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
12969288 |
ttttgaacttttactttggaa-tgagcggaaccatttagataatgagcagaatt |
12969340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University