View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_20 (Length: 523)
Name: NF16077_low_20
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 40848549 - 40848862
Alignment:
| Q |
1 |
aaaaaatatactcttctttcacggtaacgtatctaattagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatgannnnn |
100 |
Q |
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| T |
40848549 |
aaaaaatatactcttctttcacggtaacgtatctatttagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatgattttt |
40848648 |
T |
|
| Q |
101 |
nnnnnnnnnngttctggagggacatttgaatcattctcatcattttcttccgttttcttctaaaacactctatagctcatttggtgctttccccttttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||| |
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| T |
40848649 |
ttttgtttttgttctggagggacatttgaatcattctcatcattttcttccgtttccttctaaaactctctatagctcatttggctgtttccc-ttttcc |
40848747 |
T |
|
| Q |
201 |
ccgtgttatgtctattaatcataaactgagtgcacctcattcatttattgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggat |
300 |
Q |
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| T |
40848748 |
cattgttatgtctattaatcataaactgagtgcacctcattcatt-attgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggat |
40848846 |
T |
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| Q |
301 |
actccttttatataag |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
40848847 |
actccttttatataag |
40848862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 369 - 510
Target Start/End: Original strand, 40848915 - 40849057
Alignment:
| Q |
369 |
ttagttagtgagcctaaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttatacat |
468 |
Q |
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| T |
40848915 |
ttagttagtgagccttaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttacacat |
40849014 |
T |
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| Q |
469 |
tcgattttccaatcac-gtttataactctacaagtgtagagaa |
510 |
Q |
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| T |
40849015 |
tcgattttccaatcactgtttataactctacaagtgtagagaa |
40849057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 8131941 - 8131902
Alignment:
| Q |
2 |
aaaaatatactcttctttcacggtaacgtatctaattagt |
41 |
Q |
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||||||||||||| ||||||||||||| |||||||||||| |
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| T |
8131941 |
aaaaatatactctactttcacggtaacatatctaattagt |
8131902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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