View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_22 (Length: 509)
Name: NF16077_low_22
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 493
Target Start/End: Complemental strand, 4375912 - 4375417
Alignment:
| Q |
10 |
agatgaagatcaaatggaagattctgattaaatttgaaagaattttcagattaaatacctagaatttgactattatcgatgtttatgtcttggtacttgt |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
4375912 |
agatgaagatcaaatggaagattctgattaaatttgaaagattttctagattaaatacctagaatttgactattattgatgtttatgtcttggtactttt |
4375813 |
T |
|
| Q |
110 |
taaaagtttaatactatatagcttaaggttttaatttgtgacttatgaattgtgtttggctttcttaaggtagtcaatatcccttagtacatgaccttgt |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |
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| T |
4375812 |
taaaagcttaatactatatagcttaaggttttaatttgtgacttatgaattgtgtttggctttcttaaggtagtaaaaatcccttagttcatgaccttgt |
4375713 |
T |
|
| Q |
210 |
taaattatctgtatgtttgttacttgcttatgaattcttctatgtaagccaattctctttatggttgttattcttgatttatcttgaataattacttgtg |
309 |
Q |
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| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |
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| T |
4375712 |
tgatttatctgtatgtttgttacttgctgatgaattcttctatgtaagccaattctctttatggttgttattgttgatttatcttgaataattacgtatg |
4375613 |
T |
|
| Q |
310 |
tatgttttccattcaatcttttgtcatcgtgaaagaattggaactatcacctcatcaaactcacaatctcagatttcaatgtagtgactgtggcatttgt |
409 |
Q |
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|||||||||| ||||||||||| |||| |||||||||||| |||||||| |||| ||||||||||||| ||||||||||||| ||||||||| ||||| | |
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| T |
4375612 |
tatgttttcctttcaatcttttttcatggtgaaagaattgtaactatcatctcaacaaactcacaatcacagatttcaatgttgtgactgtgtcattttt |
4375513 |
T |
|
| Q |
410 |
gttgtttatcttttcctgtc------------catgcctaaatgtttttgataaatcagacaaagaaagaacgagtcactgttgtgccgtgcaaag |
493 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
4375512 |
gttgtttatcttttcctgtccatcatacacttcatgcctaaatgtttttgataaaacagacaaagaaagaacgagtcactgttgtaccgtgaaaag |
4375417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 4388585 - 4388421
Alignment:
| Q |
10 |
agatgaagatcaaatggaagattctgattaaatttgaaagaattttcagattaaatacctagaatttgactattatcgatgtttatgtcttggtacttgt |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
4388585 |
agatgaagatcaaatggaagattctgattaaatttgaaagattttctagattaaatacctagaatttgactgttatcgatgtttatatcttggtacttgt |
4388486 |
T |
|
| Q |
110 |
taaaagtttaatactatatagcttaaggttttaatttgtgacttatgaattgtgtttggctttctta |
176 |
Q |
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|||||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
4388485 |
taaaagcttaatac--tatagcttaaggtatgaatttgtgacttatgaattgtgtttggctttctta |
4388421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 4383481 - 4383364
Alignment:
| Q |
53 |
tttcagattaaatacctagaatttgactattatcgatgtttatgtcttggtacttgttaaaagtttaatactatatagcttaaggttttaatttgtgact |
152 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
4383481 |
tttctgattaaatacctagaatttgactattatcgatgttta--tcttggtacttgttaaatccttaatac----ttgcttaaggttttaatttgtgact |
4383388 |
T |
|
| Q |
153 |
tatgaattgtgtttggctttctta |
176 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
4383387 |
tgtgaattgtgtttggctttctta |
4383364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 258 - 428
Target Start/End: Complemental strand, 4387834 - 4387661
Alignment:
| Q |
258 |
ccaattctctttatggttgttattcttgatttatcttgaataattacttgtgtatgttttccattcaatcttttgtcatcgtgaaagaat---tggaact |
354 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||| ||||||||| |||| |||||||||||| |||||||||| |||| |||||||||| ||||||| |
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| T |
4387834 |
ccaattctctgtatgtttgttattgttgatttatgttgaataatgacttctgtatgttttcctgtcaatcttttttcatggtgaaagaattggtggaact |
4387735 |
T |
|
| Q |
355 |
atcacctcatcaaactcacaatctcagatttcaatgtagtgactgtggcatttgtgttgtttatcttttcctgt |
428 |
Q |
| |
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||| ||| |||| |||||||| | ||||| ||||||| || |||||| ||||| |||||||| |||||| |||| |
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|
| T |
4387734 |
atcgccttatcacactcacaaacacagatatcaatgtcgtaactgtgacatttttgttgtttctcttttgctgt |
4387661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 4387960 - 4387892
Alignment:
| Q |
177 |
aggtagtcaatatcccttagtacatgaccttgttaaattatctgtatgtttgttacttgcttatgaatt |
245 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
4387960 |
aggtagtcaatatctctcagtacatgaccttgttgatttatccgtatgtttgttacttgcttatgaatt |
4387892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 4417204 - 4417272
Alignment:
| Q |
360 |
ctcatcaaactcacaatctcagatttcaatgtagtgactgtggcatttgtgttgtttatcttttcctgtc |
429 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || ||| |||||||||| ||| ||||||| |||| |
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| T |
4417204 |
ctcatcaaactcacaatcacagatttcaatgtaataacagtgacatttgtgtt-tttttcttttcatgtc |
4417272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 4383228 - 4383188
Alignment:
| Q |
279 |
attcttgatttatcttgaataattacttgtgtatgttttcc |
319 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| |
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| T |
4383228 |
attcttgatttatctggaataattacttatgtatgttttcc |
4383188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 5726948 - 5727019
Alignment:
| Q |
10 |
agatgaagatcaaatggaagattctgattaaatttgaaagaattttcagattaaatacctagaatttgacta |
81 |
Q |
| |
|
||||| |||| |||||| ||||||| ||| ||||||||| | ||| ||||||||||| ||||||||||||| |
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| T |
5726948 |
agatggagatgaaatgggagattctaattgaatttgaaatattttctagattaaatacatagaatttgacta |
5727019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 5727060 - 5727095
Alignment:
| Q |
129 |
agcttaaggttttaatttgtgacttatgaattgtgt |
164 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
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|
| T |
5727060 |
agcttaaggttataatttgtgacttatgaattgtgt |
5727095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 4364239 - 4364181
Alignment:
| Q |
104 |
acttgttaaaagtttaatactatatagcttaaggttttaatttgtgacttatgaattgtgt |
164 |
Q |
| |
|
|||||||||||| |||||||| | ||||||| || |||||||||||||||||||||||| |
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|
| T |
4364239 |
acttgttaaaagcttaatactcaa--gcttaagtttgtaatttgtgacttatgaattgtgt |
4364181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 4417291 - 4417344
Alignment:
| Q |
440 |
tgtttttgataaatcagacaaagaaagaacgagtcactgttgtgccgtgcaaag |
493 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || |||||||||| |||||||| |
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|
| T |
4417291 |
tgtttttgataaaacagacgaagaaagaacaagccactgttgtggagtgcaaag |
4417344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 4383501 - 4383469
Alignment:
| Q |
10 |
agatgaagatcaaatggaagattctgattaaat |
42 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
4383501 |
agatgaagatcaaatggaagtttctgattaaat |
4383469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 3596259 - 3596363
Alignment:
| Q |
10 |
agatgaagatcaaatggaagattctgattaaatttgaaagaattttcagattaaatacctagaatttgactattatcgatgtttatgtcttggtacttgt |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3596259 |
agatgaagatcaaatggaatattctgattaaattttaaagattttctagattaaatacttagaatttgactattatcgatgtttatgtcttggtacttgt |
3596358 |
T |
|
| Q |
110 |
taaaa |
114 |
Q |
| |
|
||||| |
|
|
| T |
3596359 |
taaaa |
3596363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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