View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_low_24 (Length: 486)
Name: NF16077_low_24
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Complemental strand, 51708633 - 51708169
Alignment:
| Q |
13 |
aatattaacttcgcatttaaagtgaaatgcacactttaaggagagaaagagactaaaaactattcataatggtgatccagagctcctaatctcttataat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51708633 |
aatattaacttcgcatttaaagtgaaatgcacactttaaggagagaaagagactaaaaactattcataatggtgatccagagctcctaatctcttataat |
51708534 |
T |
|
| Q |
113 |
cgcctctgtaaaaagttgagttatgtctaatcgtgattgtgttatgaaagcttgtgtgtaatctctttgtataggaagtgttgtcttttctagtggaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
51708533 |
cgcctctgtaaaaagttgagttatgtctaatcgtgattgtgttatgaaagcttgtgtgtgatctct--gtataggaagcgttgtcttttctagtggaaat |
51708436 |
T |
|
| Q |
213 |
tttactaatgatgtttaattcaatcttgaatcgtccttcaagctcctttgtgatacaatccttatattcatttgatcttaaggaaattaatgcaaagttc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51708435 |
tttactaatgatgtttaattcaatcttgaatcgtccttcaagctcctttgtgatacaatccttatattcatttgatcttaaggaaattagtgcaaagttc |
51708336 |
T |
|
| Q |
313 |
tatgttgattaacgaatagaaaatgtgacattgaataatccataatggtgcatgttttatatgtcattattatccttcaacaatatgtcacaattctgaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51708335 |
tatgttgattaacgaatagaaaatgtgacattgaataatccataatggtgcatgttttatatgtcattattatccttcaacaatatgtcacaatactgaa |
51708236 |
T |
|
| Q |
413 |
gatatcgaggagttcatgagcaatgttattagttctataccctaaaacaaattatttagaataatct |
479 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51708235 |
gatatcgaggagttcatgaacaatgttattagttctataccctaaaacaaattatttagaataatct |
51708169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University