View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_25 (Length: 480)
Name: NF16077_low_25
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 31103300 - 31103748
Alignment:
| Q |
19 |
agctctagttcttccttgactttatcgatttcgttagaatgtgattgttccatgacaaaaccaggtacttctctttccttgatggagtcagaggacttac |
118 |
Q |
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| T |
31103300 |
agctctagttcttccttgactttgtcgatttcgttagaaggtgattgttccatgacaaaaccaggtacttctctttccttgatggagtcagaggacttac |
31103399 |
T |
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| Q |
119 |
tcatgtcatttgaatcctcttgtattggacttagaggagcagagtcgcatagctccggatcagtttgagtagatgcatcttccattctatgaatcttctc |
218 |
Q |
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| T |
31103400 |
tcatgtcatttgaatcctcttgtgttggacttagaggagcagagtcgcatagctccggatcagtttgagtagatgcatcttccattctatgaatcttctc |
31103499 |
T |
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| Q |
219 |
tgagacttttccatgctcttcggatacgagtccattatcaggtgcttgtgtaacatgtagagctggaaacattttagaaaacaaatgttagactatttca |
318 |
Q |
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| T |
31103500 |
tgagacttttccatgctcttcggatacgagtccattatcaggtgcttgtgtaacatgtagagctggaaacgttttagaaaacaaatgttagactatttca |
31103599 |
T |
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| Q |
319 |
aagaaaaagaaagttgaaatgtaaggatagagaattgttacatttttctggtaattctccaacaagtatgtgatccgctttcaaagtcataagctcagat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31103600 |
aagaaaaagaaagttgaaatgtaaggatagagaattgttacatttttctggtaattctccaacaaatatgtgatccgctttcaaagtcataagctcagat |
31103699 |
T |
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| Q |
419 |
aggtgagaaggaagagatttctcagaatgatcagtaatcttacagtcct |
467 |
Q |
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| T |
31103700 |
aggtgagaaggaagagatttctcagaatgatcagtaatcttacagtcct |
31103748 |
T |
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