View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_29 (Length: 444)
Name: NF16077_low_29
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_29 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 30880 - 31290
Alignment:
| Q |
15 |
tatactcatatttgatctaaagtgtcagtgctacataatataaataccaagaaaaatttaaatgtgaaaaatcaatctattcatacctttagtaaattgg |
114 |
Q |
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| T |
30880 |
tatactcatatttaatctaaagtgtcagtgctacataatataaatactaagaaaaatttaaatgtgaaaaatcaatctattcatacctttagtaaattgg |
30979 |
T |
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| Q |
115 |
caatataagtttgtggtgggttaactccattccaatcataatggtgttctggtacagtgaagtattcttcaacaaaaggggttgtgtcaacaaagaaaat |
214 |
Q |
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| T |
30980 |
caatataagtttgtggtgggttaactccattccaatcataatggtgttctggtacagtgaagtattcttcaacaaaaggggttgtgtcaacaaagaaaat |
31079 |
T |
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| Q |
215 |
ctcaaccagctctgcacaagaacaaaaatatacatttagaaagnnnnnnnnnctacatgaacatgatttttaagcatttcattaacttgaaaataacatg |
314 |
Q |
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| T |
31080 |
ctcaaccagctctgcacaagaacaaaaatataca-taagaaa---aaaaaaactacatgaacatgatttttaaacatttcattaacttgaaaataacatg |
31175 |
T |
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| Q |
315 |
caacaaagaaaatacctgaatctacaatgaaagaccttaaacaaagccacctactatcaatttgtctaaggaatgggctcaattgagcctctacatcacc |
414 |
Q |
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| T |
31176 |
caacaaagaaaatacctgaatctacaatgaaagaccttaaacaaagccacctactatcaatttgtctaaggaatgggctcaattgagcctctacatcacc |
31275 |
T |
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| Q |
415 |
cctgtagtcatggtt |
429 |
Q |
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| T |
31276 |
cctgtagtcatggtt |
31290 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 430
Target Start/End: Original strand, 45501566 - 45501614
Alignment:
| Q |
382 |
aaggaatgggctcaattgagcctctacatcacccctgtagtcatggttg |
430 |
Q |
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| T |
45501566 |
aaggaatgggcttaattgagcttcaacatctcctctgtagtcatggttg |
45501614 |
T |
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