View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_32 (Length: 425)

Name: NF16077_low_32
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_32
NF16077_low_32
[»] chr2 (16 HSPs)
chr2 (15-404)||(14487940-14488329)
chr2 (346-386)||(7994082-7994122)
chr2 (346-386)||(37996564-37996604)
chr2 (346-386)||(16903878-16903918)
chr2 (346-386)||(30899417-30899457)
chr2 (262-401)||(36390970-36391106)
chr2 (347-386)||(6610025-6610064)
chr2 (347-386)||(15562022-15562061)
chr2 (317-400)||(40992236-40992319)
chr2 (346-388)||(3705362-3705404)
chr2 (347-400)||(30545417-30545469)
chr2 (315-384)||(36476696-36476764)
chr2 (359-404)||(41519918-41519963)
chr2 (346-386)||(7994554-7994594)
chr2 (346-386)||(15561568-15561608)
chr2 (346-386)||(16903425-16903465)
[»] chr1 (16 HSPs)
chr1 (117-397)||(573398-573669)
chr1 (21-75)||(573776-573830)
chr1 (23-75)||(573676-573728)
chr1 (346-388)||(48594206-48594248)
chr1 (346-388)||(48598817-48598859)
chr1 (346-386)||(38328867-38328907)
chr1 (346-386)||(43755876-43755916)
chr1 (307-387)||(49611501-49611581)
chr1 (346-388)||(2820983-2821025)
chr1 (346-388)||(2821470-2821512)
chr1 (346-388)||(12800451-12800493)
chr1 (346-388)||(28371684-28371726)
chr1 (346-386)||(32537672-32537712)
chr1 (350-386)||(38468933-38468969)
chr1 (346-386)||(38469266-38469306)
chr1 (298-338)||(46357952-46357992)
[»] chr3 (24 HSPs)
chr3 (142-379)||(49244600-49244828)
chr3 (346-386)||(5113225-5113265)
chr3 (346-386)||(20586099-20586139)
chr3 (346-386)||(20586565-20586605)
chr3 (346-386)||(24394715-24394755)
chr3 (346-386)||(26006173-26006213)
chr3 (346-386)||(36992154-36992194)
chr3 (346-386)||(37017594-37017634)
chr3 (346-386)||(43104758-43104798)
chr3 (346-386)||(45000808-45000848)
chr3 (35-75)||(49244844-49244884)
chr3 (346-388)||(929936-929978)
chr3 (346-388)||(930414-930456)
chr3 (346-384)||(5113689-5113727)
chr3 (346-388)||(11442136-11442178)
chr3 (346-388)||(14788581-14788623)
chr3 (346-388)||(32474443-32474485)
chr3 (346-388)||(42258042-42258084)
chr3 (346-388)||(43521102-43521144)
chr3 (346-384)||(45297579-45297616)
chr3 (314-387)||(46719688-46719761)
chr3 (346-386)||(8326509-8326549)
chr3 (346-386)||(26006759-26006799)
chr3 (346-386)||(45000342-45000382)
[»] scaffold0180 (1 HSPs)
scaffold0180 (307-387)||(23033-23113)
[»] scaffold0155 (1 HSPs)
scaffold0155 (317-387)||(17366-17436)
[»] chr5 (10 HSPs)
chr5 (346-386)||(24027667-24027707)
chr5 (346-386)||(3595804-3595844)
chr5 (346-386)||(7858354-7858394)
chr5 (346-386)||(8321368-8321408)
chr5 (346-386)||(12330175-12330215)
chr5 (346-386)||(12330643-12330683)
chr5 (347-386)||(8320902-8320941)
chr5 (314-387)||(33283192-33283264)
chr5 (346-386)||(3596274-3596314)
chr5 (346-386)||(35106900-35106940)
[»] chr7 (12 HSPs)
chr7 (317-400)||(41224794-41224877)
chr7 (347-400)||(29006361-29006414)
chr7 (347-400)||(29007180-29007233)
chr7 (314-387)||(44896073-44896146)
chr7 (346-386)||(25137439-25137479)
chr7 (346-386)||(30414208-30414248)
chr7 (317-387)||(29314608-29314678)
chr7 (346-388)||(33140275-33140317)
chr7 (346-387)||(42901117-42901158)
chr7 (346-386)||(4180319-4180359)
chr7 (346-386)||(20560262-20560302)
chr7 (346-386)||(25137906-25137946)
[»] chr8 (5 HSPs)
chr8 (314-387)||(35759187-35759260)
chr8 (314-387)||(41348171-41348244)
chr8 (317-400)||(41092186-41092269)
chr8 (346-388)||(14197684-14197726)
chr8 (346-386)||(30846043-30846083)
[»] chr4 (13 HSPs)
chr4 (314-387)||(52758658-52758731)
chr4 (346-386)||(5235401-5235441)
chr4 (346-386)||(20174997-20175037)
chr4 (346-386)||(39412792-39412832)
chr4 (300-387)||(11680303-11680390)
chr4 (300-387)||(11688582-11688669)
chr4 (346-387)||(19860356-19860397)
chr4 (350-387)||(31910581-31910618)
chr4 (285-386)||(39413542-39413642)
chr4 (315-388)||(53289499-53289572)
chr4 (346-386)||(6933848-6933888)
chr4 (346-386)||(6934483-6934523)
chr4 (347-387)||(25655620-25655660)
[»] scaffold0508 (2 HSPs)
scaffold0508 (346-386)||(4160-4200)
scaffold0508 (346-386)||(4605-4645)
[»] scaffold0022 (1 HSPs)
scaffold0022 (346-386)||(61601-61641)
[»] chr6 (8 HSPs)
chr6 (346-386)||(7635151-7635191)
chr6 (346-386)||(7635616-7635656)
chr6 (299-387)||(10608253-10608341)
chr6 (346-386)||(18290242-18290282)
chr6 (346-386)||(18290476-18290516)
chr6 (346-388)||(28983273-28983315)
chr6 (346-388)||(34717736-34717778)
chr6 (285-386)||(18605029-18605129)


Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 14488329 - 14487940
Alignment:
15 caaagggtataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccatacctgagnnnnnnntcattgcaggcgatgttagacgatca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||  |||    
14488329 caaagggtataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccatacctgagaaaaaaatcattgcaggcgatgttagactgtca 14488230  T
115 acaactattttatttgtggtgtgtgagactttcttgttttttattccattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
14488229 acaactattttatttgtggtgtgtgagactttcttgttttttattctattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggag 14488130  T
215 aattcgggaatgtcaatcctatgttgttgctcatggaggtgagtgggatggaggagagagaatgataattgaagatggtgtgtaaaaagatatagtgtag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
14488129 aattcgggaatgtcaatcctatgttgttgctcatggaggtgagtgggatggaggagagagaatgataattgatgatggtgtgtaaaaagatatagtgtag 14488030  T
315 agagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatact 404  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
14488029 agagactatgataaaagtgtgttccataatcaatctaatggttaaaaagtaactttcccataatgggaaaaaagatccctttcccatact 14487940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 7994122 - 7994082
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| |||||||||||||||||||||||    
7994122 gatctaatggttaaaaactaactttcccatgatgggaaaaa 7994082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 37996564 - 37996604
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| |||||||||||||||||||||||    
37996564 gatctaatggttaaaaactaactttcccatgatgggaaaaa 37996604  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 16903878 - 16903918
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
16903878 gatctaatggttaaaaactaactttcccatggtgggaaaaa 16903918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 30899457 - 30899417
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
30899457 gatctaatggttaaaaactaactttcccatggtgggaaaaa 30899417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 401
Target Start/End: Complemental strand, 36391106 - 36390970
Alignment:
262 atggaggagagagaatgataattgaagatggtgtgtaaaaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaa 361  Q
    |||||||||||||| ||||  | |||||| ||||| |||||  | |||||| |||||| || ||| ||| ||||||||  | | ||||||||||||||||    
36391106 atggaggagagagagtgatggtagaagatagtgtggaaaaa--tctagtgttgagagaataggattaaaatgtgttcctcatttgatctaatggttaaaa 36391009  T
362 aataactttcccatgatgggaaaaaagatccctttcccat 401  Q
      || |||||||||| ||||||| ||  ||||||||||||    
36391008 ttta-ctttcccatggtgggaaacaacttccctttcccat 36390970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 6610025 - 6610064
Alignment:
347 atctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    |||||||||||||||| ||||||||||||| |||||||||    
6610025 atctaatggttaaaaactaactttcccatggtgggaaaaa 6610064  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 15562022 - 15562061
Alignment:
347 atctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    |||||||||||||||| ||||||||||||| |||||||||    
15562022 atctaatggttaaaaactaactttcccatggtgggaaaaa 15562061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 400
Target Start/End: Complemental strand, 40992319 - 40992236
Alignment:
317 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttccca 400  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||||||||| | |||||||| |  |||||||||    
40992319 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtaggaaaaaacaaacctttccca 40992236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 3705404 - 3705362
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
3705404 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 3705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 30545417 - 30545469
Alignment:
347 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttccca 400  Q
    ||||||||||||||||| ||||||||||| |||||||| ||  |||||||||||    
30545417 atctaatggttaaaaaa-aactttcccatcatgggaaacaacttccctttccca 30545469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 36476696 - 36476764
Alignment:
315 agagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaa 384  Q
    |||||||||||||||| |||||||| || |  |||||||||| || ||| | ||||||||||||||||||    
36476696 agagactatgataaaattgtgttccttatttaatctaatggtcaagaaa-atctttcccatgatgggaaa 36476764  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 41519918 - 41519963
Alignment:
359 aaaaataactttcccatgatgggaaaaaagatccctttcccatact 404  Q
    ||||| |||||||||||| ||||||||||  |||||||||||||||    
41519918 aaaaaaaactttcccatggtgggaaaaaacttccctttcccatact 41519963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 7994554 - 7994594
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
7994554 gatctaatggttaaaaactaactttcccatggtggaaaaaa 7994594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 15561608 - 15561568
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
15561608 gatctaatggttaaaaactaactttccaatggtgggaaaaa 15561568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 16903465 - 16903425
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||| ||||| |||||||||    
16903465 gatctaatggttaaaaactaacttttccatggtgggaaaaa 16903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 117 - 397
Target Start/End: Complemental strand, 573669 - 573398
Alignment:
117 aactattttatttgtggtgtgtgagactttcttgttttttattccattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggagaa 216  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
573669 aactattttatctgtggtatgtggaactttcttgttttttattttattttaaagaaattaaattaacaatgaaaa-gtacaaacaagggaagaagtagaa 573571  T
217 ttcgggaatgtcaatcctatgttgttgctcatggaggtgagtgggatggaggagagagaatgataattgaagatggtgtgtaaaaagatatagtgtagag 316  Q
    || ||||  ||  |      ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||| |||||||||| ||    
573570 tttgggacagttga------gttgttgctcatggaggtgagtgagatggaggggagagaatgataattgatgatg-tgtgtaaaaa-atatagtgtaaag 573479  T
317 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttc 397  Q
    |||||||||||||| |||||| | || | ||||||||||||||||||||||||  ||||||| |||||||||||| |||||    
573478 agactatgataaaaatgtgtttcttagttgatctaatggttaaaaaataacttgtccatgataggaaaaaagatcactttc 573398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 573830 - 573776
Alignment:
21 gtataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccata 75  Q
    ||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||    
573830 gtatagaaaatcggagaaacaaagatgaagaacaaagggtttctagatttccata 573776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 573728 - 573676
Alignment:
23 ataaaaaatcatagaaacaaagatgaagaacaaag-gttttctagatttccata 75  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
573728 ataaaaaatcatagaaacaaagatgaagaacaaagagttttc-agatttccata 573676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 48594206 - 48594248
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
48594206 gatctaatggtcaaaaactaactttcccatgatgggaaaaaag 48594248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 48598817 - 48598859
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
48598817 gatctaatggtcaaaaactaactttcccatgatgggaaaaaag 48598859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 38328867 - 38328907
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
38328867 gatctaatgattaaaaactaactttcccatgatgggaaaaa 38328907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 43755916 - 43755876
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
43755916 gatctaatggttaaaaactaactttcccatggtgggaaaaa 43755876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 49611501 - 49611581
Alignment:
307 tagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||||| ||||||| ||| ||||| |||||||| || |  |||||||||  ||||| ||| ||||||||||||||||||||    
49611501 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaattttcccatgatgggaaaaaa 49611581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 2821025 - 2820983
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
2821025 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 2820983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 2821470 - 2821512
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
2821470 gatctaatggtcaaaaattaactttcccatggtgggaaaaaag 2821512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 12800451 - 12800493
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
12800451 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 12800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 28371684 - 28371726
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
28371684 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 28371726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 32537712 - 32537672
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
32537712 gatccaatggttaaaaactaactttcccatggtgggaaaaa 32537672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 38468969 - 38468933
Alignment:
350 taatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||| ||||||||||||| |||||||||    
38468969 taatggttaaaaactaactttcccatggtgggaaaaa 38468933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 38469266 - 38469306
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
38469266 gatctaatggttaaaaactaactttcccatggtggaaaaaa 38469306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 46357992 - 46357952
Alignment:
298 aaaaagatatagtgtagagagactatgataaaagtgtgttc 338  Q
    ||||| |||| || |||||||||||||||||||||||||||    
46357992 aaaaaaatatggtatagagagactatgataaaagtgtgttc 46357952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 142 - 379
Target Start/End: Complemental strand, 49244828 - 49244600
Alignment:
142 actttcttgttttttattccattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggagaattcgggaatgtcaatcctatgttgt 241  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||| ||||  ||  |      |||||    
49244828 actttcttgttttttattttattttaaagaaattaaattaacaatgaaaa-gtacaaacaagggaagaaatagaatttgggaccgtgga------gttgt 49244736  T
242 tgctcatggaggtgagtgggatggaggagagagaatgataattgaagatggtgtgtaaaaagatatagtgtagagagactatgataaaagtgtgttccat 341  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||| |    
49244735 tgctcatggaggtgagtgggatggaggggagggaatgataattgatgatg-tgtgtaaaaa-atatagtgtagagagactatgataaaagcgtgttcctt 49244638  T
342 aatcgatctaatggttaaaaaataactttcccatgatg 379  Q
    | | ||||||||||||||||||||| ||  ||||||||    
49244637 agttgatctaatggttaaaaaataatttgtccatgatg 49244600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 5113265 - 5113225
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
5113265 gatctaatggttaaaaactaactttcccatggtgggaaaaa 5113225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 20586139 - 20586099
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
20586139 gatctaatggttaaaaactaactttcccatggtgggaaaaa 20586099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 20586565 - 20586605
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
20586565 gatctaatggttaaaaactaactttcccatggtgggaaaaa 20586605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 24394715 - 24394755
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
24394715 gatctaatggttaaaaactaactttcccatggtgggaaaaa 24394755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 26006213 - 26006173
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
26006213 gatctaatggttaaaaactaactttcccatggtgggaaaaa 26006173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 36992154 - 36992194
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
36992154 gatctaatggttaaaaactaactttcccatggtgggaaaaa 36992194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 37017594 - 37017634
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
37017594 gatctaatggttaaaaactaactttcccatggtgggaaaaa 37017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 43104758 - 43104798
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
43104758 gatctaatggttaaaaactaactttcccattatgggaaaaa 43104798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 45000808 - 45000848
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
45000808 gatctaatggttaaaaactaactttcccatggtgggaaaaa 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 49244884 - 49244844
Alignment:
35 agaaacaaagatgaagaacaaaggttttctagatttccata 75  Q
    |||||||||||||||||||||||| |||| |||||||||||    
49244884 agaaacaaagatgaagaacaaagggtttccagatttccata 49244844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 929978 - 929936
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
929978 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 929936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 930414 - 930456
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
930414 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 930456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 5113689 - 5113727
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaa 384  Q
    ||||||||||||||||| ||||||||||||| |||||||    
5113689 gatctaatggttaaaaactaactttcccatggtgggaaa 5113727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 11442136 - 11442178
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
11442136 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 11442178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 14788581 - 14788623
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||    
14788581 gatctaatggtcaaaaactaactttcccatgataggaaaaaag 14788623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 32474443 - 32474485
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
32474443 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 32474485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 42258042 - 42258084
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||    
42258042 gatctaatggtcaaaaactaactttccaatgatgggaaaaaag 42258084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 43521144 - 43521102
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
43521144 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 43521102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 45297616 - 45297579
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaa 384  Q
    |||||||||||||||||| ||||||||||||||||||||    
45297616 gatctaatggttaaaaaa-aactttcccatgatgggaaa 45297579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 46719761 - 46719688
Alignment:
314 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||| ||| ||||| |||||||| || |  |||||||||  ||||| |||||||||||||||| |||||||    
46719761 gagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttcccatgatgagaaaaaa 46719688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 8326549 - 8326509
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||| |||| | ||||||||||||||||||||    
8326549 gatctaatggttagaaaaaagctttcccatgatgggaaaaa 8326509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 26006759 - 26006799
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
26006759 gatctaatggtcaaaaactaactttctcatgatgggaaaaa 26006799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 45000382 - 45000342
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||  |||||||||    
45000382 gatctaatggttaaaaactaactttcccatagtgggaaaaa 45000342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 23033 - 23113
Alignment:
307 tagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||||| ||||||| ||||||||| | |||||| || |  ||||||||||| |||| ||||||||||||||||||||||||    
23033 tagtgttgagagaccatgataaaattatgttccctatttaatctaatggttcaaaactaactttcccatgatgggaaaaaa 23113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 17436 - 17366
Alignment:
317 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||| ||||||||| |||||||| || | |||| |||||||||||| ||||||||||||| ||||||||||    
17436 agaccatgataaaattgtgttccctatttgatcaaatggttaaaaactaactttcccatggtgggaaaaaa 17366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 24027667 - 24027707
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| |||||||||||||||||||||||    
24027667 gatctaatggttaaaaactaactttcccatgatgggaaaaa 24027707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 3595844 - 3595804
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
3595844 gatctaatggttaaaaactaactttcccatggtgggaaaaa 3595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 7858394 - 7858354
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
7858394 gatctaatggttaaaaactaactttcccatggtgggaaaaa 7858354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 8321368 - 8321408
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
8321368 gatctaatggttaaaaactaactttcccatggtgggaaaaa 8321408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 12330215 - 12330175
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
12330215 gatctaatggttaaaaattaactttcccatggtgggaaaaa 12330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 12330643 - 12330683
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
12330643 gatctaatggttaaaaactaactttcccatggtgggaaaaa 12330683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 8320941 - 8320902
Alignment:
347 atctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    |||||||||||||||| ||||||||||||| |||||||||    
8320941 atctaatggttaaaaactaactttcccatggtgggaaaaa 8320902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 33283264 - 33283192
Alignment:
314 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||||| |||||||||| ||||||||  | | ||||||||||| |||||| | |||||||||||||||| ||||    
33283264 gagagagtatgataaaaatgtgttcctcatttgatctaatggtcaaaaaa-acctttcccatgatgggataaaa 33283192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 3596274 - 3596314
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
3596274 gatctaatggttaaaaactaattttcccatggtgggaaaaa 3596314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 35106940 - 35106900
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||| ||| ||||||||||||||||||||||| |||||||    
35106940 gatctgatgcttaaaaaataactttcccatgataggaaaaa 35106900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 400
Target Start/End: Original strand, 41224794 - 41224877
Alignment:
317 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttccca 400  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||||||||| |||||||||| |  |||||||||    
41224794 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtgggaaaaaataagcctttccca 41224877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 29006414 - 29006361
Alignment:
347 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttccca 400  Q
    |||||||||||||||| ||||||||||||| |||||||||| |  |||||||||    
29006414 atctaatggttaaaaactaactttcccatggtgggaaaaaacaagcctttccca 29006361  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 29007180 - 29007233
Alignment:
347 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttccca 400  Q
    |||||||||||||||| ||||||||||||| |||||||||| |  |||||||||    
29007180 atctaatggttaaaaactaactttcccatggtgggaaaaaacaagcctttccca 29007233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 44896146 - 44896073
Alignment:
314 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||| ||||||||| ||||| || || |  |||||||||||||||| ||||||||||||| |||| |||||    
44896146 gagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaa 44896073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 25137479 - 25137439
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
25137479 gatctaatggttaaaaactaactttcccatggtgggaaaaa 25137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 30414248 - 30414208
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
30414248 gatctaatggttaaaaactaactttcccatggtgggaaaaa 30414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 29314678 - 29314608
Alignment:
317 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||||||||| ||| ||||||    
29314678 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtggaaaaaaa 29314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 33140275 - 33140317
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
33140275 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 33140317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 42901117 - 42901158
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
42901117 gatctaatggtcaaaaactaactttcccatggtgggaaaaaa 42901158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 4180319 - 4180359
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||| ||||| ||||||||||||| |||||||||    
4180319 gatctaatggtcaaaaactaactttcccatggtgggaaaaa 4180359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 20560262 - 20560302
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||| ||||| ||||||||||||| |||||||||    
20560262 gatctaatggtcaaaaactaactttcccatggtgggaaaaa 20560302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 25137906 - 25137946
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
25137906 gatctaatggttaaaaactaattttcccatggtgggaaaaa 25137946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 35759187 - 35759260
Alignment:
314 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||| ||||||||| ||||| || || |  |||||||||||||||| ||||||||||||| |||| |||||    
35759187 gagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaa 35759260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 41348244 - 41348171
Alignment:
314 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||| ||||||||| ||||| || || |  |||||||||||||||| ||||||||||||| |||| |||||    
41348244 gagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaa 41348171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 400
Target Start/End: Complemental strand, 41092269 - 41092186
Alignment:
317 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttccca 400  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||| ||||| |||||||||| |  |||||||||    
41092269 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttttccatggtgggaaaaaacaagcctttccca 41092186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 14197726 - 14197684
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
14197726 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 14197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 30846083 - 30846043
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
30846083 gatctaatggttaaaaactaactttcctatggtgggaaaaa 30846043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 52758658 - 52758731
Alignment:
314 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||||||| ||||| |||||||| || |  |||||||||  ||||| |||||||||||||||| |||||||    
52758658 gagagactatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttcccatgatgagaaaaaa 52758731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 5235441 - 5235401
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
5235441 gatctaatggttaaaaactaactttcccatggtgggaaaaa 5235401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 20175037 - 20174997
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
20175037 gatctaatggttaaaaactaactttcccatggtgggaaaaa 20174997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 39412832 - 39412792
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    |||| |||||||||||| |||||||||||||||||||||||    
39412832 gatccaatggttaaaaactaactttcccatgatgggaaaaa 39412792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 11680390 - 11680303
Alignment:
300 aaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||||| |||||  ||||||| || |||| | |||||||| || |  |||||||||| ||||| ||||||||||||| ||||||||||    
11680390 aaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaa 11680303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 11688669 - 11688582
Alignment:
300 aaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||||| |||||  ||||||| || |||| | |||||||| || |  |||||||||| ||||| ||||||||||||| ||||||||||    
11688669 aaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaa 11688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 19860397 - 19860356
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
19860397 gatctaatggtcaaaaactaactttcccatggtgggaaaaaa 19860356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 31910618 - 31910581
Alignment:
350 taatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||||||||| ||||||||||||| ||||||||||    
31910618 taatggttaaaaactaactttcccatggtgggaaaaaa 31910581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 39413542 - 39413642
Alignment:
285 gaagatggtgtgtaaaaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaa 384  Q
    ||||||| |||| ||||| || |||||| ||||||| ||||||||| | |||||  || |  ||| |||||||||||| ||||||||| ||| |||||||    
39413542 gaagatgatgtggaaaaa-atttagtgtcgagagaccatgataaaattatgttctctacttaatccaatggttaaaaactaactttcctatggtgggaaa 39413640  T
385 aa 386  Q
    ||    
39413641 aa 39413642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 53289572 - 53289499
Alignment:
315 agagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    |||||| ||||||||| ||||| || || |  |||||||| ||||||| ||||||||||||| |||| ||||||    
53289572 agagaccatgataaaattgtgtaccctatttaatctaatgattaaaaattaactttcccatgttggggaaaaag 53289499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 6933888 - 6933848
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
6933888 gatctaatggttaaaaactaacttttccatgatggaaaaaa 6933848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 6934483 - 6934523
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
6934483 gatctaatggttaaaaactaactttcccatggtggaaaaaa 6934523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 25655620 - 25655660
Alignment:
347 atctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    |||||||||| ||||| ||||||||||||| ||||||||||    
25655620 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 25655660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 4200 - 4160
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
4200 gatctaatggttaaaaactaactttcccatggtgggaaaaa 4160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 4605 - 4645
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
4605 gatctaattgttaaaaactaactttcccatgatggaaaaaa 4645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 61641 - 61601
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
61641 gatctaatggtcaaaaactaactttcccatgatgggaaaaa 61601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 7635191 - 7635151
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
7635191 gatctaatggttaaaaactaactttcccatggtgggaaaaa 7635151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 7635616 - 7635656
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
7635616 gatctaatggttaaaaactaactttcccatggtgggaaaaa 7635656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 10608253 - 10608341
Alignment:
299 aaaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 387  Q
    ||||||| |||||  ||||||| || |||| | |||||||| || |  |||||||||| ||||| ||||||||||||| ||||||||||    
10608253 aaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaa 10608341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 18290282 - 18290242
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
18290282 gatctaatggttaaaaattaactttcccatggtgggaaaaa 18290242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 18290476 - 18290516
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaa 386  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
18290476 gatctaatggttaaaaactaactttcccatggtgggaaaaa 18290516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 28983273 - 28983315
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
28983273 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 28983315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 34717736 - 34717778
Alignment:
346 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 388  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
34717736 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 34717778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 18605129 - 18605029
Alignment:
285 gaagatggtgtgtaaaaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaa 384  Q
    ||||||| |||| ||||| || |||||| ||||||| ||||||||| | |||||| || |  ||  |||||||||||| ||||||||||||| ||| |||    
18605129 gaagatgatgtggaaaaa-atttagtgttgagagaccatgataaaattatgttccctacttaattcaatggttaaaaattaactttcccatggtggaaaa 18605031  T
385 aa 386  Q
    ||    
18605030 aa 18605029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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