View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16077_low_33 (Length: 418)
Name: NF16077_low_33
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 42158442 - 42158841
Alignment:
| Q |
17 |
agaagaagttcaaagactttctggcatcggaaacagctttcctatcttccgtaacatacttaagatgatatttgaccaatttcctaaaggattgcatcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158442 |
agaagaagttcaaagactttctggcatcggaaacagctttcctatcttcggtaacaaccttaagatgatatttgaccaatttcctaaaggattgcatcaa |
42158541 |
T |
|
| Q |
117 |
cccagtc---------cctttactctttctcggccatttacgcatgatttcatcattacagcccttaaa-ctctttctcaagtcccctcagttttttcaa |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
42158542 |
cccagtcaacccagtccctttactctttctcggccatttacgcatgatttcatcattacagcccttaaaactttttctcaagtcccctcagttttttcaa |
42158641 |
T |
|
| Q |
207 |
ggtgcgagaatcgtttgtagcattctcgaacatgagaatctcaagagaatcaagccaaggtccacgaaaacgaaatgtatggtgaagatcttcaagtaac |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158642 |
ggtgcaagaatcgtttgtagcattctcgaacatgagaatcttaagagaatcaagccaaggtccacgaaaacgaaatgtatggtgaagatcttcaagtaac |
42158741 |
T |
|
| Q |
307 |
ttaacgagtagagagcgttgattgtcaaggagatctaagattgaatggtttttgagaagaagtaaaagttccgccaaggttgtgtatgccaagcccttca |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158742 |
ttaacgagtagaaagcgttgattgtcaaggagatctaagattgaatggttcttgagaagaagtaaaagttccgccaaggttgtgtatgccaagcccttca |
42158841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University