View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_34 (Length: 412)
Name: NF16077_low_34
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 3686285 - 3686124
Alignment:
| Q |
12 |
atgaaagactggaccaactctaatacttgaagaacgaccatccaaaaatagccatagccaaagaaaaatagatacctccctccactttcataaacctgca |
111 |
Q |
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| T |
3686285 |
atgaaagactggaccaactctaatacttgaagaacgaccatccaaaaatagccatagccaaagaaaaatagatacctccctccactttcataaacctgca |
3686186 |
T |
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| Q |
112 |
aaagtttagaaaacataaatatcagtcaatgtgttaccatcttaatacacttcacatttcac |
173 |
Q |
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| T |
3686185 |
aaagtttagaaaacaaaaatattagtcaatgtgttaccatcctaatacacttcacatttcac |
3686124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 392
Target Start/End: Complemental strand, 3686050 - 3685898
Alignment:
| Q |
247 |
tgactattttgttctagaaatttatgtttctataacca-------gaggtatattacatttaagaagatatnnnnnnnnttaaagaatctcacatgaata |
339 |
Q |
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| T |
3686050 |
tgactattttgttctagcaatttatgtttctataaccatagcatagaggtatatgagatttaagaagatataaaaaaaattaaagaatctcacatgaata |
3685951 |
T |
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| Q |
340 |
atccaataagccagtgnnnnnnntcttgaaacaccaagagcaaatacataata |
392 |
Q |
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| T |
3685950 |
atccaataagccagtgaaaaaaatcttgaaacaccaagagcaaatacataata |
3685898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 3678429 - 3678357
Alignment:
| Q |
324 |
gaatctcacatgaataatccaataagccagtgnnnnnnntcttgaaacaccaagagcaaatacataatatcct |
396 |
Q |
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| T |
3678429 |
gaatctcacatgaataatccaataagccaatgatacaaatcttgagacaccaagagcaaatacataatatcct |
3678357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 3669419 - 3669342
Alignment:
| Q |
319 |
ttaaagaatctcacatgaataatccaataagccagtgnnnnnnntcttgaaacaccaagagcaaatacataatatcct |
396 |
Q |
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|||| ||| |||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||| |
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| T |
3669419 |
ttaatgaaactcacatgaataatccaaaatgcaagtgtgaagaatcttgaaacaccaagagcaaatacataatatcct |
3669342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 3663091 - 3663019
Alignment:
| Q |
324 |
gaatctcacatgaataatccaataagccagtgnnnnnnntcttgaaacaccaagagcaaatacataatatcct |
396 |
Q |
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| T |
3663091 |
gaatcttacatgaataatccaaaaagccaatgagagaaatcttgagacaccaagagcaaatacataatatcct |
3663019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 3678665 - 3678612
Alignment:
| Q |
50 |
catccaaaaatagccatagccaaagaaaaatagatacctccctccactttcata |
103 |
Q |
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|||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
3678665 |
catccataaatagccatagccaaacaaaaatagatatttccctccagtttcata |
3678612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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