View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_36 (Length: 402)
Name: NF16077_low_36
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 36904495 - 36904687
Alignment:
| Q |
13 |
aatatcagtaacagagaaaaa-tcatccaacataatttatgtccttcatattccataannnnnnngtattaaaaaattgtgactacacaaagtagcatct |
111 |
Q |
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| T |
36904495 |
aatatcagcaacagagaaaaaatcatccaacataatttatgtccttcatattccataattttattgtatcaaaaaattgtgactacacaa-gtagcatct |
36904593 |
T |
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| Q |
112 |
caaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagtcacaacataatggctgcctgataggtct |
205 |
Q |
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| T |
36904594 |
caaaatgcataattgtttacacaacccaacataaaagaataactcatagttgcattacaccaaagtcacaacataatggctgcttgataggtct |
36904687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 36904761 - 36904799
Alignment:
| Q |
275 |
ttgagaggtagttaggccaaataagacatgctgcctata |
313 |
Q |
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| T |
36904761 |
ttgagaggtagttaggccaaataagacatgctgcctata |
36904799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 7685016 - 7685134
Alignment:
| Q |
86 |
aattgtgactacacaaagtagcatctcaaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagtcacaacat |
185 |
Q |
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| T |
7685016 |
aattgtgactacacaa-gtagcatctcaaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagtcacaacat |
7685114 |
T |
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| Q |
186 |
aatggctgcctgataggtct |
205 |
Q |
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| T |
7685115 |
aatggctgcctgataggtct |
7685134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 270 - 385
Target Start/End: Original strand, 7685199 - 7685310
Alignment:
| Q |
270 |
ctgagttgagaggtagttaggccaaataagacatgctgcctatatataaatagaccctagtcaaagaggtcgtggtttggtccgtacttatggtgttcat |
369 |
Q |
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| T |
7685199 |
ctgagttgagaggtagttaagccaaataagacatgctgcctata----aatagaccctagtcaaagaggtcgtggtttggtcggtacttatggtgttcat |
7685294 |
T |
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| Q |
370 |
gttgacggacgtagct |
385 |
Q |
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| T |
7685295 |
gttgacggacgtagct |
7685310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 7684977 - 7685017
Alignment:
| Q |
29 |
aaaaatcatccaacataatttatgtccttcatattccataa |
69 |
Q |
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| T |
7684977 |
aaaaatcatccaacataatttatgtccttcatattccataa |
7685017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 38979240 - 38979304
Alignment:
| Q |
321 |
agaccctagtcaaagaggtcgtggtttggtccgtacttatggtgttcatgttgacggacgtagct |
385 |
Q |
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| T |
38979240 |
agaccctagtcaaagaggtcgtggtttggtctgcacttatgtcgttcatgttgacggacgtagct |
38979304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 16101748 - 16101805
Alignment:
| Q |
324 |
ccctagtcaaagaggtcgtggtttggtccgtacttatggtgttcatgttgacggacgt |
381 |
Q |
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| T |
16101748 |
ccctagtcaaagaggttgtggtttggtccgtacttatggcgttcatgttgatggacgt |
16101805 |
T |
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