View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_37 (Length: 401)
Name: NF16077_low_37
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 43054621 - 43054993
Alignment:
| Q |
13 |
aatataaatgagatagaagaaagaaattcaaataaaatttcaagaaattactagcttaggacttagaactcaacatcacacttggtgggtataagtcgaa |
112 |
Q |
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| T |
43054621 |
aatataaatgagatagaagaaagaaattcaaataaaatttcaagaaattactagcttagaacttagaactcaacatcacacttggtgggtataagtcgaa |
43054720 |
T |
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| Q |
113 |
tgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaa |
212 |
Q |
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| T |
43054721 |
tgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaa |
43054820 |
T |
|
| Q |
213 |
cctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagtttt |
312 |
Q |
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| T |
43054821 |
cctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagtttt |
43054920 |
T |
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| Q |
313 |
tgaccagaaaaaacaccggtcatgggattgctattcttcttgtcttgacgaaatgagttcatgtgtgtgataa |
385 |
Q |
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| T |
43054921 |
tgaccagaaaaaacaccggtcatgggattgctattcttcttgtcttgacgaaatgagttcatgtgtgtgataa |
43054993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 383
Target Start/End: Original strand, 43062002 - 43062242
Alignment:
| Q |
143 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
242 |
Q |
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| T |
43062002 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
43062101 |
T |
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| Q |
243 |
atcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagtttttgaccagaaaaaacaccggtcatgggattg |
342 |
Q |
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| T |
43062102 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtaccaacaacttttgtcctaagaaaacgccactcatggggtca |
43062201 |
T |
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| Q |
343 |
ctattcttcttgtcttgacgaaatgagttcatgtgtgtgat |
383 |
Q |
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| T |
43062202 |
ctagttttcttgttttggcgaaacgagttcatgtgtgtgat |
43062242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 43049276 - 43049457
Alignment:
| Q |
202 |
ccaagtttaaacctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagca |
301 |
Q |
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| T |
43049276 |
ccaagtctgaacctaatcctaaagtaaagcctcacatagatatcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgagca |
43049375 |
T |
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| Q |
302 |
tcaatagtttttgaccagaaaaaacaccggtcatgggattgctattcttcttgtcttgacgaaatgagttcatgtgtgtgat |
383 |
Q |
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| T |
43049376 |
cgaaaacatgttgtcctgagaaaacagcactcatggggttgctgctcttcttgtattggcgaaatgagttcatgtgtgtgat |
43049457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 43024146 - 43024230
Alignment:
| Q |
223 |
aagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaata |
307 |
Q |
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| T |
43024146 |
aagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaata |
43024230 |
T |
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