View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_38 (Length: 398)
Name: NF16077_low_38
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 27422653 - 27423023
Alignment:
| Q |
5 |
gaggagcagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcatacc |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27422653 |
gaggaggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcatacc |
27422752 |
T |
|
| Q |
105 |
agaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttctcttccatgcatatgtctattgaatggtagagtaggcctct |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| || ||||||| |||||||||| |
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| T |
27422753 |
agaacaaaactttgcgatccctgccatcctaatcaaatatgaaggtcaattaaactttctattccatgaataggtctgttttatggtagggtaggcctct |
27422852 |
T |
|
| Q |
205 |
aagacaataccatgtgatcttatattttctcttgtctccttgtagtttctatgactccatcctaatcctatactacagtatatacttccactaataattc |
304 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27422853 |
aagacaataccatgtgatcttatatatgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtatatacttccactaataattc |
27422952 |
T |
|
| Q |
305 |
aagtagccaatggtttctcaaaattcttttatctatataaattttaaaggttagaaccatttagaaccaac |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27422953 |
aagtagccaatggtttctcaaaattcttttatctatataaattttataggttagaaccatttagaaccaac |
27423023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 343
Target Start/End: Original strand, 27412106 - 27412444
Alignment:
| Q |
5 |
gaggagcagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcatacc |
104 |
Q |
| |
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|||||| | ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| | ||| |||||| | ||||||||||| |
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| T |
27412106 |
gaggaggaaagaagcgaaccgatattgaacacaagaacttgagctactatgaaccaaattttttatttttgtaagaccaactccatgatatttgcatacc |
27412205 |
T |
|
| Q |
105 |
agaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttctcttccatgcatatgtctattgaatggtagagtaggcctct |
204 |
Q |
| |
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|| ||| ||||||| ||||| ||| ||||||| || ||| ||||||||||||||||||| ||||||| ||| |||| || ||||||| |||| ||||| |
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| T |
27412206 |
aggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctattccatgaataggtctgttttatggtagggtagacctct |
27412305 |
T |
|
| Q |
205 |
aagacaataccatgtgatcttatattttctcttgtctccttgtagtttctatgactccatcctaatcctatactacagtatatacttccactaataattc |
304 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| || ||||| ||| |||| |
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| T |
27412306 |
aagacaataccatgtgatcttatatatgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtataaacctccaccaatcattc |
27412405 |
T |
|
| Q |
305 |
aagtagccaatggtttctcaaaattcttttatctatata |
343 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
27412406 |
aagtagccaatggtttctcaatattcttttatctatata |
27412444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 29 - 343
Target Start/End: Complemental strand, 27570736 - 27570418
Alignment:
| Q |
29 |
ttgaacacaagaacatgagccactatgaaccacattttat---atttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccc |
125 |
Q |
| |
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|||||| |||| |||||| || ||| ||||||||||||| ||||||||| ||| |||||| | ||||||||||||| ||| ||||||| ||||| |
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| T |
27570736 |
ttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtcct |
27570637 |
T |
|
| Q |
126 |
tgccatcctaatcaaatatgaaggtcaattaaactttctcttccatgcatatgtctattgaatggtagagtaggcctctaagacaataccatgtgatctt |
225 |
Q |
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||| ||||||| || ||| ||||||||||||||||||| ||||||| ||| |||| || ||||||| |||| |||||||||||||||||||||||||| |
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| T |
27570636 |
tgcattcctaattaagtatcaaggtcaattaaactttctattccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatctt |
27570537 |
T |
|
| Q |
226 |
atattttctcttgtctccttgtagtttctatgactccatcctaatcctatactacagtatatacttccactaataattcaagtagccaatggtttctcaa |
325 |
Q |
| |
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|||| | ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
27570536 |
atatatgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtatatacctccaccaatcattcaagtagccaatggtttctcaa |
27570437 |
T |
|
| Q |
326 |
-aattcttttatctatata |
343 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
27570436 |
ttattcttttaactatata |
27570418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 27415028 - 27415176
Alignment:
| Q |
16 |
aagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaact |
115 |
Q |
| |
|
||||||||| || |||||||||||| |||| ||| ||||||||||||||||||||| || || |||| || || | ||||||||||||| ||| || | |
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| T |
27415028 |
aagagaaccaattttgaacacaagatcatgggcctctatgaaccacattttatattattacaagacaagcttcatgatatttgcataccaggacagaagt |
27415127 |
T |
|
| Q |
116 |
ttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttct |
164 |
Q |
| |
|
||||||||| |||| || |||| || ||| ||||||||||||||||||| |
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| T |
27415128 |
ttgcggtccttgccttcttaattaagtatcaaggtcaattaaactttct |
27415176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 27566633 - 27566478
Alignment:
| Q |
14 |
agaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatat--ttttgcatgacagactccacaaaatttgcataccagaacaa |
111 |
Q |
| |
|
||||||||||| |||| |||||||||| || | ||||||| ||||||||||||||| |||| || |||| | |||| |||||||||||||| |||| |
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| T |
27566633 |
agaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatatagtttttcaggacaaattccattaaatttgcataccataacag |
27566534 |
T |
|
| Q |
112 |
aactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttctctt |
167 |
Q |
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||||||||||||||||| | |||| || || | |||||||||||||||||||| |
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| T |
27566533 |
aactttgcggtccctgcattgctaaataagtaacatggtcaattaaactttctctt |
27566478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 27425282 - 27425423
Alignment:
| Q |
26 |
atattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccc |
125 |
Q |
| |
|
||||||||||||||| || | |||| | |||||||| ||||||||||||| |||| |||||| | ||||||||||| |||| |||||||||||||| |
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|
| T |
27425282 |
atattgaacacaagatcacaaaccaccaggaaccacaatttatatttttgccagacaaactccatgatatttgcatacctgaacggaactttgcggtccc |
27425381 |
T |
|
| Q |
126 |
tgccatcctaatcaaatatgaaggtcaattaaactttctctt |
167 |
Q |
| |
|
|||| | |||| || || ||||| |||||||||||||||| |
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| T |
27425382 |
tgccttgctaaataagtaacaaggttaattaaactttctctt |
27425423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 27415245 - 27415319
Alignment:
| Q |
205 |
aagacaataccatgtgatcttatattttctcttgtctccttgtagtttctatgactccatcctaatcctatacta |
279 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||| |||| || | ||| ||||||||||||||| |
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|
| T |
27415245 |
aagacaataccatgtgatcttatatatcctcttgtctctttgtatattctttgtccccaacctaatcctatacta |
27415319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 27419893 - 27419963
Alignment:
| Q |
94 |
atttgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttct |
164 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||| || |||| || ||| ||||||||||||||||||| |
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|
| T |
27419893 |
atttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaactttct |
27419963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 27564095 - 27564028
Alignment:
| Q |
42 |
catgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaac |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| || ||| ||||| ||| |||||||| |
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|
| T |
27564095 |
catgagccattatgaaccacattttatatttttgcaagacaaaccccatgaaattcgcacaccagaac |
27564028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 27420021 - 27420078
Alignment:
| Q |
202 |
tctaagacaataccatgtgatcttatattttctcttgtctccttgtagtttctatgac |
259 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||| |||||||||| |||| |||| |
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|
| T |
27420021 |
tctaagacaacaccatgtgatcttatatatgctcttgcctccttgtagattctttgac |
27420078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 27570992 - 27570928
Alignment:
| Q |
14 |
agaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcat |
78 |
Q |
| |
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||||||||||| ||||| ||| ||||| || | | |||||||||||| |||||||||||||||| |
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| T |
27570992 |
agaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgcat |
27570928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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