View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_40 (Length: 394)
Name: NF16077_low_40
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 28146095 - 28145727
Alignment:
| Q |
18 |
ttcatgttaggcaggatccaatttgatnnnnnnntattcaagcacatcatataaacatcttccttgattatctccaagcatgcttgaaagnnnnnnnctt |
117 |
Q |
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| T |
28146095 |
ttcatgttaggcaggatccaatttgataaaaaaatattcaagcacatcatataaacatcttccttgattatctccaagcatgcttgaaagaaaaaaactt |
28145996 |
T |
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| Q |
118 |
caaaaccataaggcccaggtgcaacttctttgttcattgaggaaacaatactttttatttcttctcttgtgaaaagagttgtaaaatgagaaaccatatg |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28145995 |
caaaaccataaggccctggtgcaacttctttgttcattgaggaaacaatactttttatttcttctcttgtgaaaagagttgtaaaatgagaaaccatatg |
28145896 |
T |
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| Q |
218 |
acttttaatctattctggatcagtgatgactctgtcttcaatatttagtgaaactatcttcttataatcttgcgtaatttgagcagttttattgaaaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28145895 |
acttttaatctattctggatcagtgatgactctgtctttaatatttagtgaaactatcttcttataatcttgcataatttgagcagttttattgaaaata |
28145796 |
T |
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| Q |
318 |
aaatagtgtttctatcccattcacaaaacttcttccatattcagagccttttataaatcaacctttgct |
386 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28145795 |
aaatagtgtttctatcccattcgcaaaacttcttccatattcagagccttttataaatcaatctttgct |
28145727 |
T |
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