View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_42 (Length: 388)
Name: NF16077_low_42
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 35842969 - 35842585
Alignment:
| Q |
1 |
agctagcatatgatataaactatctcaaggacttcccctatatgcatgtaagcagggccgctgaatcaatatggattgtttctttcaaattccatatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35842969 |
agctagcatatgatataaactatctcaaggacttcccctatatgcatgtaagcagggccgctgaatcaatatggattgtttctttcaaattccatatcaa |
35842870 |
T |
|
| Q |
101 |
cttgttctaatctgctcaccttcagatagttgtccaaaatagagtttgagagaccccaaaaccctcgtagc----atgtattgagatacacacacttttc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
35842869 |
cttgttctaatctgctcaccttcagatagttgtccaaaatagagtttgagagaccccaaaaccctcgtagctagcatgtattcagatacacacacttttc |
35842770 |
T |
|
| Q |
197 |
taccataaaaacatcacttgtatgaggcttttttatttgctcatcgtagtacttgctggtacatcatcttcctctaatgaaatgaaggagttgttgtcca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35842769 |
taccataaaaacatcacttgtatgaggcttttttatttgctcatcgtagtacttgctggtacatcatcttcctctaatgaaatgaaggagttgttatcca |
35842670 |
T |
|
| Q |
297 |
agtccgctcaactcatcaaaataattattggaaacttacacatccaagtgaaagaatgggatttgaacctcaatgatgatgtcca |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||||| |
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| T |
35842669 |
agtccgctcaactcatcaaaataattattggaaacttacacaccgaagtgaaagaatgagatttgaacctcaattatgatgtcca |
35842585 |
T |
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